RNA id: XM_026946977.2


Basic Information

Item Value
RNA id XM_026946977.2
length 5275
RNA type mRNA
GC content 0.51
exon number 29
gene id pfas
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3991667 ~ 4016550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGGGTGGTAAAAAGTTTCGGACACGTGGGTTGAGTACAGGACTGCCTGCACTGGTCAGGAGGTCTgcatactacactgtactacaccaTATCATCTTATAGCACAGTATACTGAGCTGTCAGCTTCATCTCACACCAACTCGCCCAGTCACTGAGCACCTGGAAGGATCATGTCAGTCTTGCGATTCTACAGGAGGGCAGACGGTGAAGGTGGGCGGAGCCTGCAGAGGGTCAAACAGCTCTATCCACAGGTCACCATAACCACTGAACTCTGCTACAATGTGGAAGTGAATGGTGCTGACTGTGTGAGTGGGGAGCAGAAGGATATCCTGCGCTGGTTATTTACTCCTCCTCAGTCTTCAGGGCTGTCTGATGAGCCCACTCTCAGAGCGTCGATGCCAGGAGAGAGCCTGGTGGAGATTGGCCCCAGGCTGAACTTCTCCACTGCATGGTCCACAAATGCCGTGTCCATCTGCCAGAGTGCAGGCCTGAGTCAGGTGACCAGGGTTGAGCTGTCTCGCAGGCACTTCATCAAGGATGAGCTGGATACGCTGAGGAAAGATGAAGAGATGGAGAAGTTAATCAGCCTCTTGTACGATAGCATGACTGAGTGTATCTACCCCTATCCCATCACATCTTTCTTTGTGGACGTCCGGCCTCAGGAAGTGTTTGAGGTTGACATTTTAGGAAAAGGTCGTGCTGCGTTGGAGAGGGCCAACGATGAGCTTGGACTAGCTTTTGACTCCTGGGATCTGGACTACTACACAGCATTGTTCCAGAGGGTGAAGAGAAACCCAACCAGTGTTGAATGCTTTGACCTGGCACAGTCCAACAGtgagcacagtcgCCACTGGTTCTTCCGAGGCCGGATGGTGATTGACGGACAGGAGCAGAAGGACACTCTTTTCAGCCTCATTATGGGCACCCAGCAGCACAGCAATCAGAACAATGTCATCAAGTTCTCCGATAACAGcagtggtATTAAAGGCATGGAGCTGGAGTGCATGCTCCCCACTGACCCTGCGCAGGCCAGCTGCTACAAGACCAGACACACCACCAGACACGTCATCTTcactgcagaaacacacaacTTCCCCACAGGTGTCGCTCCTTTTAGCGGTGCTACTACAGGTACTGGCGGGCGAATCAGAGACGTACAGAGCGCAGGCCGAGGTGGACACGTGATTGCAGGGACTGCTGGGTACTGCTTTGGTAACCTCCATATCCCAGGTTTTGCCCTTCCATGGGAGGAGGGTGGTTGGGAGTACCCTTCCAGCTTTGCCCCTCCTTTGCAGGTGGCTATTGAAGCCAGTGATGGAGCTTCAGACTACGGAAACAAGTTTGGAGAGCCAGTGCTGGCAGGCTTTGCCCGGTCCTTTGGAATGCGCTTGGCCAATGGTGAGCGTCGAGAATGGATTAAGCCAATAATGTTCAGCGGTGGACTGGGCTCCATTGAGGATGAGCATGTAAAGAAAGAGGAGGCAAAGTCAGGTATGGAGGTGGTGAAAATAGGAGGCCCTGTGTATAGGATTGGTGTAGGGGGAGGGGCTGCGTCCTCTATACAGgtaCAGGGTGATAACTCCAGCGATCGTGATTTGGGTGCGGTTCAAAGAGGAGATGCTGAGATGGAGCAGAAGATGAATCGGGCTCTAAGGGCATGTCTGGAGAGAGCTGCAGGAAACCCCATTTGCAGTATTCATGACCAGGGTGCAGGAGGCAATGGAAATGTGTTGAAAGAGCTGAGTGAGCCTGCTGGAGCTGTCATCTACACCAGCAAATTTAAAAGAGGTGATCCCACCCTCAGTGTTTTGGAGTTGTGGGGGGCTGAGTATCAGGAGAGTAATGCTCTGTTGCTCCGCCCATCTGACCGGAGTtttctggagagagtgtgtcAGAGGGAGAAATGCCCTGTTGACTTTGTGGGTCACATCACAGGTGATAGTAAGATTGTTCTTGTGGATGACATCTCTAGCTCTGGCAATGCCATGATTGGTGGGCGGAACCCTGTGGATTTGGAACTTGATTGGGTATTGGGAAAGATGCCTCAGAAGGAGTTCAGGCTGGACTGTGTGCCTTCTTGTctgcagcctctctctctccctccaggACTTTTGGTTTTGCCTGCTCTCGAGAGAGTTCTTAGACTGCCCGCTGTGGCCAGCAAACGCTACCTCACCAACAAGGTGGATCGCTCTGTGACGGGATTGGTGgcacagcagcagtgtgtaggACCCCTCCACACCCCACTGGCTGATGTGGCTGTGGTTGCTCTATCACCCTTCAGCCTCCAGGGTGCTGCAACAGCAATTGGGGAGCAGCCAATTAAAGGCCTTGTTTCCCCGGAGGTTGGAGCTCGAATGGCTGTGGGCGAGGCCCTCACCAATCTAGTGTTTGCACGTGTCACTGCTCTCAAGgaTATAAAGTGCAGCGGCAACTGGATGTGGGCGGCGAAGTTGCCAGGTGAAGGGGCGTGTCTGTGGGAGGCGTGTCAGGCTATGTGCAAGGTCATGGGTCAGTTGGGCGTTGCTGTCGATGGGGGAAAGGACTCCCTCAGCATGGCTGCTCGTGTTGGTGGAGAAACCGTCAAAGCaccaggTTCTTTGGTCATCtctgtgtatgctgtgtgtCCTGATATCACTGCTACTGTCACGCCTGACCTGGATGACCCAGAGGGCAAAGGTGTATTGCTGTATATTCCTGTGAGTGTGGGTAAATACAGGCTGGGTGGCTCTGCTCTTGCTCAGTGTTATGGTCAGCTGGGAGATTGCAGTCCAGACCTGGATCATCCTGACCTTCTCTCAGCCTGCTTCACCACCACCCAGACACTCATCGAagaTCGTCTGCTGAGTGCAGGGCATGATGTCAGCGATGGAGGACTCATTACCTGTCTGCTGGAGATGGCCTTTGCAGGAAATCGTGGGATAGAAGTTGACTTGCCTTTTGATGGAGTTGAAGtgatGGAGGCTTTGTTCTCGGAGGAGCTGGGTCTGGTGTtggaggtgtgtgagagtgatgtGGAAAGTGTGCGTCAGCGGTACACACGCGCTGGGCTGTGCTGCTACAAGATTGGCACCACCTGTGGCTTCGGACCTGACTCTATGGTCAAGGTGAGCCTGTGTGGACAGGAAGTGCTGCATGAGCGTCTTCCCACTCTCAGGGCATTATGGGAGAGCACAAGCTTCCAACTGGAATGTCTGCAGGCCAATCCACTGTGCGTACAGCAGGAAGAGCAGGGGCTCTCCAACCGCACCCAGCCATACCTCAAACTGACATTTGACCCTGCTAAAACACAGATAGCAAAAGACCTAGCTGTGGGCAAGCCTCGTGTTGCAGTCATCCGTGAGGAAGGCAGCAATGGCGATCGAGagatgtctgtctctctgtatatgGCTGGATTCGAgGTGTGGGATGTCACGATGCAGGACCTGTGCTCCGGCTCCACAACCCTTGACCCATTCCGAGCTGTTGTGTTTGTAGGCGGCTTCAGTTACGCTGATGTGCTGGGATCAGCCAAAGGCTGGGCGGCTACTGTCACCTTTAACCCCAATGCCCGGGAGGAGTTTGAGCGTTTCCGGCGTCGTAATGACACACTTAGTCTAGGGGTGTGTAATGGCTGCCAGCTCCTGGCTCTGCTAGGTTGGGTGGGTGGAGCACAGGATGGAGGCTCTGAGGTGGCCTTGACCCATAATAAGTCAGGTCGGTTTGAGTCCCGCTTTGTGAGTGTCGGCATTCTGCCTTCTCCAGCCATTATGCTGAAGGGCATGGAGGGATCTGCCCTGGGTGTGTGGGTTGCCCATGGAGAAGGTCTGATGCAGTTCCGCTCCCCTGAAGCACAGCAGAAGCTGATCAGTGCATCTCTGGCACCACTGCGCTACGTGGATGACTCCGGAGCCCCCACTGAGACCTACCCCATGAACCCAAACGGCTCTGCCCTGGGCATAGCAGGTATCTGCTCGCCTGACGGGCGCCACCTGGCCATGATGCCCCACCCAGAGCGCACGGTGCTGGGCTGGCAGTGGGCCTGGGCACCTGCACCTCTCAGAGCCTCACTGCGTGCCTCGCCTTGGCTCCGCATGTTCCACAATGCCGCTGTGTGGTGTCAGAGCGAGGGGTCGTCATCATAGTGATTATGGATATTTTTTCACTGCACTGTTACATCTGTGAAAGCATCCTGAAAGAAAGTGATTATTTGTATGGAGGATTGAGAAGAGTTAGATTTACATAGTTATGTAAAAGgctaaacctaaaaaaaaaattaatacaaacatGGGTAACAAGAGTcaaactgaagatggctgcattCCAAGTAAAACACTAGATATTTGGCAGATGGCTGCATTCCAAGTAAAACACTAGATATTTGGCAATCTAACTAAGATATTTAGCTAACTTGTGTCCTCAAAATTGTGTTAAAGAAATGCTCTTACATGACCGCAAAGGccagggagcaaaattggccgtgctctctgggtgagagGGGTGGCATACGCTCTctaccctgtcaatcacagcaatactagccaatcataggcatctgtgggctcatgtatgcggaagaagGTAGAcagtgctttcctccaagtgtgttacgctgtcCTGTGACGTGGCATGATCAGCAGTGGCTGTACTAGTAGTtagcttcacgtgtcttggaggaagcatgtgttagctttcaccctccctggGTGGTAGTTGTTGTATGATAGGGAAGAGCTTGCTGGTGGATGGGAATTGACAGGTCATGAAAATGaggtgaaataaataagaattaaaaaaaaaagaaagaaagaaatgattttgTGGCTACTGTGATGTGTTTACTTGACAGAACCCAGCAATAAGCACCAAACTgtgctaaatgtaaatgtgattttgattgattaaaaatgttattattaatgtcaaTATTGTAACCTCATACAATATCTCAAAAAGTCTAAGCTTTCATCTTCCAGCAGTTTGTTGTTCTGGGCCATTTTTGTGCAAGTTGTGAATATTTGTCCACCAGCACACATTTACAGATGAACTGTGAGGAGAGTTCAGGTGATGGCAATAACAAGAATTAGCCAAAAAGCCACAATGAGTAGTCCTGTTTTACAGAGACTTCATGCACCAAAACTGCTGGAATCAAGAACGAGTTAGAAAAACGTTTTGTGATTTGCAGGATATGTGAGgatatatatgttttatgtatCTCTCAGTTATATACACCAAGTTTGATATTTCATGACACTACTTCAAAGatgaaataataaagtaaacTTTTGACAAGAA

Function

GO:

id name namespace
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0004642 phosphoribosylformylglycinamidine synthase activity molecular_function

KEGG:

id description
K01952 PFAS, purL; phosphoribosylformylglycinamidine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342935 lncRNA upstream 17652 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA upstream 43209 3948196 ~ 3948458 (+) True G289517
TU342784 lncRNA upstream 146988 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 252453 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 303751 3623064 ~ 3687916 (+) True G289351
TU342978 lncRNA downstream 30659 4047209 ~ 4055985 (+) True G289533
TU342965 lncRNA downstream 37907 4054457 ~ 4069715 (+) False G289531
TU342967 lncRNA downstream 37907 4054457 ~ 4070367 (+) True G289531
TU342971 lncRNA downstream 37907 4054457 ~ 4069715 (+) False G289531
TU342972 lncRNA downstream 37907 4054457 ~ 4069715 (+) False G289531
XM_026946901.2 mRNA upstream 8973 3943497 ~ 3982694 (+) True ipo13
XM_026946902.2 mRNA upstream 14927 3943494 ~ 3976740 (+) False ipo13
XM_034313657.1 mRNA upstream 74587 3905694 ~ 3917080 (+) True LOC113546823
XM_026946899.2 mRNA upstream 74587 3905792 ~ 3917080 (+) False LOC113546823
XM_026946993.2 mRNA upstream 89801 3897027 ~ 3901866 (+) True mgst3a
XM_026946956.2 mRNA downstream 8132 4024682 ~ 4045273 (+) True hook1
XM_026946957.2 mRNA downstream 8132 4024682 ~ 4045273 (+) False hook1
XM_034313865.1 mRNA downstream 8338 4024888 ~ 4045273 (+) False hook1
XM_034313866.1 mRNA downstream 8338 4024888 ~ 4045273 (+) False hook1
XM_026944441.2 mRNA downstream 85119 4101669 ~ 4115455 (+) True ppat
trnad-guc_14 other upstream 3544 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 11882 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 623895 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 626265 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1495615 2489677 ~ 2496052 (+) True cnstb
TU342966 other downstream 47085 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 310921 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 312282 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 317008 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 321353 4337903 ~ 4337974 (+) True trnad-guc_19

Expression Profile