RNA id: XM_026946999.2


Basic Information

Item Value
RNA id XM_026946999.2
length 2510
RNA type mRNA
GC content 0.40
exon number 6
gene id stmn4
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2612201 ~ 2618880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttctttcttagtCGTTAATAATGTATGTGAtgcagcttgtgtgtgtatgtaaaagtCAATGCTGATGTTTATTAGTGAGTGAGGATGTTTGCTGTTGTACCTACTGATTGATATTTTATGGTCTAGGAAGAGCCTGATACTAACTACAGACTGACATCATGCCTGTGTGCCATTATGGCTGCAGAAGTCAATAGTTATGTAATACGTTTAAAGTGGGATTTACAGGGAGCAGTTGTGCTTCTTCTAACAATTATGCCCAATATTTCAATAACATCAGTGCATGCTATCCGGTAGAGATGGAagccagtatcagtatcaggcTGATACCAAGAAAACATGGTGGATTGGAtatcagatcctgtaacaaagGGCAAAGATTGAATCTGGATTCAATCTTTTTCGAGAGAGTGTGAAAGAATTTAACTCAGAGGCActtcagttgaaaaaaaaaaatatttaaatacattctaAAGCTTTAGGTGTTTAGtttgcaaagaaaacaacatcGGATGGGTATCGATATTGGCTCATACTTAAGGTTTCAGTGTCGTTACTGGTAtcagtaaaagaaaatgtggtaATGTGACATGTctagtgtttgtgctgttttgaCACTGTTAACCTCCAAGCGCAGCCGTGGCTCTTCTTGCCATTCCACTGACAAGCTGTAAATAAACAGCCACGTCTGCAGGAAGTGGATATTCATcagcattctgtgtgtgtgggaggttggacaagtggaaAGAGCAGATTAAGCCTCCTTACTACGTGAAGAAAGAAAACCAACAGTATGACCCTGGCAGCATATCGAGACAAACTGAAGGAGCTCCCTCTAGTGTCACTATTCTGCTCCTGCATCAAGACGGATGTTATAGACAAGCCGACCTACAAAGCTGAAGATGCAGTGGACCTGAACTGGTGTGAGATCAAGGACGTGGAAGTGATCGAGCTGAACAAGCGTGCATCAGGCCAGGCGTTTGAAGTGATCCTGAAGCCCCCTTCATTCGACGGTGTGCCCGAGCTGAATGCCTCCATGCCACACCGCAAGGACCCCTCACTGGAGGAGATCCAGAAGAAGCTGGAGGCTGCTGAGGAGAGACGGAAgTTCCAGGAGGCAGAGCTGCTGAAGCACCTGGCTGAGAAGAGAGAGCACGAGAGGGAGGTCATCCAGAAGGCCTTCGAGGAGAACAACAACTTCATCAAGAACGCAAAGGAGAAGCTGGAACAGAAGATGGAGATCAACAAAGAGAACCGCGAGGCCCTGCTGGCCGCCATGCTGGAGAGACTTCAGGAAAAGGACAAGCACGCAGAAGAAGTGAGGAAGAATAAAGAGTTGAAGGAGGAAGCATGCCGATAGAGTGGTGGAGGAAAAGAGGACTGTGTTTGggatggtttaaaaaaaacataggaTGAGACAGAGATCAATAAAAGAAGACATCACTTCTCATTATAGTAATGGAGGCGAGTAGTGGACATTGCTAATGGCaatttaaaacacaacaaacctttttttttttttttttttttttttttcatggggTATAAAATGTCAAAGCTAATAACTGTCTGGATAACAATGCAAGGTGCATCGAAGTTCTAGTGTCAAAGGTTCAGGTAGTAGATATCAGCAACCTTTTAGAAAATCAATCACTTGTACATATTGAGATGAGGATGTAGAAGATAGGAGAGAAACAagaaataaggaataaataatGCAGACATACAGACAATGCAGACTGAATACACTGAAAATTAAGATCAGTACTTTGAGGACAAGATATTGCACTTCATAAACGTCTATACACATTGCAAAAAATCTGCTTTTTCTTAAATGTATACCATCTAGCAAAGCGCAAGCTATGCATGTTTATTCacttatcatttatttattatagaggCACATGTGATTTctcaataaaacaaatttataaaGGAATTTATTCACATTGCCTTTGTTCTCTAAGCAGTATTGCATTCATGGTTATGCATTTTCATGAGATTTGATGAAAAAATATTAGAAGCTCCTAACTGTTAGCCTCTTCAGAATGAAATTCCTTACTGAATATTTAAGCACAATTCAAAGGCACATATAAGCTAAAcgatttttatttgtatcatgCTCAAGCGATAGCTAAGAAGAAAGATGTCAAGAGAATGGATCACAACATGTCAAGAATGCAGAGCAGGGACATAATGAGAAAACAGGGAAGACAGAGAAGaaggataaagagagagagagaattaagaaACACTGAGATGCTGTACTTATATTTTAATGAAGTGGCAATCAGAGAAGCTGCTTTAGCATTAGCTGTGAATGCTGTGATTTGTTTTGGCatgtctctgtgtttttcttgttaggtgactttttaaaatgacaatatgTGCAGTGATGAGCATTGATGTGATTTGTTCAGGAAACCCCATTTGCTCTTTTTGTGGTTGTCATAAAGATGATCCTATTTCTGGTTTGGCATGATGGTCAGTAAAAACATCTCTTTACTAAACGA

Function

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU341983 lncRNA upstream 4127 2581309 ~ 2608373 (+) True G288734
TU341932 lncRNA upstream 97125 2506569 ~ 2515375 (+) True G288694
TU341934 lncRNA upstream 102086 2506569 ~ 2510414 (+) False G288694
TU341802 lncRNA upstream 159126 2448422 ~ 2453374 (+) True G288581
TU341720 lncRNA upstream 286211 2325658 ~ 2326289 (+) True G288512
TU341993 lncRNA downstream 8878 2627758 ~ 2628318 (+) True G288740
TU342050 lncRNA downstream 145390 2764270 ~ 2765055 (+) True G288789
TU342114 lncRNA downstream 250716 2869596 ~ 2916810 (+) True G288834
TU342116 lncRNA downstream 251482 2870362 ~ 2870666 (+) True G288836
TU342119 lncRNA downstream 359453 2978333 ~ 2980205 (+) True G288839
XM_026946818.2 mRNA upstream 116647 2485036 ~ 2495853 (+) False cnstb
XM_026946819.2 mRNA upstream 116647 2485036 ~ 2495853 (+) False cnstb
XM_026946966.2 mRNA upstream 137897 2454793 ~ 2474603 (+) True kif26bb
XM_026946967.2 mRNA upstream 141588 2454793 ~ 2470912 (+) False kif26bb
XM_026947002.2 mRNA upstream 173460 2436698 ~ 2439040 (+) True lft1
XM_026946958.2 mRNA downstream 21400 2640280 ~ 2644268 (+) True paqr8
XM_026946959.2 mRNA downstream 21400 2640280 ~ 2644268 (+) False paqr8
XM_026946825.2 mRNA downstream 27193 2646073 ~ 2654271 (+) True LOC113546789
XM_026946828.2 mRNA downstream 37889 2656769 ~ 2664965 (+) True znf395b
XM_034313454.1 mRNA downstream 38313 2657193 ~ 2664965 (+) False znf395b
TU341918 other upstream 116448 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 470863 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 603694 1996797 ~ 2008806 (+) False ptchd4
TU341023 other upstream 1253138 1358186 ~ 1359362 (+) False srp9
XR_004580082.1 other upstream 1347868 1259176 ~ 1264632 (+) False LOC117599677
XR_003404755.1 other downstream 746398 3365278 ~ 3365402 (+) True LOC113546887
XR_003404754.1 other downstream 748768 3367648 ~ 3367772 (+) True LOC113546886
XR_004580118.1 other downstream 1324615 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 1369172 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 1444755 4063635 ~ 4069715 (+) False G289531

Expression Profile