Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026947002.2 |
| length | 1391 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 4 |
| gene id | lft1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 2436698 ~ 2439040 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003140 | determination of left/right asymmetry in lateral mesoderm | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0035462 | determination of left/right asymmetry in diencephalon | biological_process |
| GO:0016049 | cell growth | biological_process |
| GO:0061371 | determination of heart left/right asymmetry | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005160 | transforming growth factor beta receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| K04668 | LEFTY; left-right determination factor |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU341720 | lncRNA | upstream | 110409 | 2325658 ~ 2326289 (+) | True | G288512 |
| TU341667 | lncRNA | upstream | 218060 | 2215577 ~ 2218638 (+) | True | G288461 |
| XR_004580150.1 | lncRNA | upstream | 285460 | 2147215 ~ 2151238 (+) | True | LOC117599781 |
| TU341394 | lncRNA | upstream | 362817 | 2027343 ~ 2073881 (+) | False | G288225 |
| TU341802 | lncRNA | downstream | 9382 | 2448422 ~ 2453374 (+) | True | G288581 |
| TU341932 | lncRNA | downstream | 67529 | 2506569 ~ 2515375 (+) | True | G288694 |
| TU341934 | lncRNA | downstream | 67529 | 2506569 ~ 2510414 (+) | False | G288694 |
| TU341983 | lncRNA | downstream | 142269 | 2581309 ~ 2608373 (+) | True | G288734 |
| TU341993 | lncRNA | downstream | 188718 | 2627758 ~ 2628318 (+) | True | G288740 |
| XM_026946863.2 | mRNA | upstream | 82100 | 2336070 ~ 2354598 (+) | False | fzd3a |
| XM_026946862.2 | mRNA | upstream | 82100 | 2336071 ~ 2354598 (+) | True | fzd3a |
| XM_026946983.2 | mRNA | upstream | 224497 | 2189759 ~ 2212201 (+) | True | tdrd6 |
| XM_026946939.2 | mRNA | upstream | 255542 | 2162431 ~ 2181156 (+) | True | pla2g7 |
| XM_034313859.1 | mRNA | upstream | 278004 | 2151234 ~ 2158694 (+) | True | adgrf3b |
| XM_026946966.2 | mRNA | downstream | 15753 | 2454793 ~ 2474603 (+) | True | kif26bb |
| XM_026946967.2 | mRNA | downstream | 15753 | 2454793 ~ 2470912 (+) | False | kif26bb |
| XM_026946818.2 | mRNA | downstream | 45996 | 2485036 ~ 2495853 (+) | False | cnstb |
| XM_026946819.2 | mRNA | downstream | 45996 | 2485036 ~ 2495853 (+) | False | cnstb |
| XM_026946998.2 | mRNA | downstream | 173161 | 2612201 ~ 2618880 (+) | False | stmn4 |
| XR_004580079.1 | other | upstream | 295061 | 2133158 ~ 2141637 (+) | False | LOC113546780 |
| TU341376 | other | upstream | 427892 | 1996797 ~ 2008806 (+) | False | ptchd4 |
| TU341023 | other | upstream | 1077336 | 1358186 ~ 1359362 (+) | False | srp9 |
| XR_004580082.1 | other | upstream | 1172066 | 1259176 ~ 1264632 (+) | False | LOC117599677 |
| TU340986 | other | upstream | 1193026 | 1243057 ~ 1243672 (+) | True | G287892 |
| TU341918 | other | downstream | 50637 | 2489677 ~ 2496052 (+) | True | cnstb |
| XR_003404755.1 | other | downstream | 926238 | 3365278 ~ 3365402 (+) | True | LOC113546887 |
| XR_003404754.1 | other | downstream | 928608 | 3367648 ~ 3367772 (+) | True | LOC113546886 |
| XR_004580118.1 | other | downstream | 1504455 | 3943495 ~ 3979785 (+) | False | ipo13 |
| trnad-guc_14 | other | downstream | 1549012 | 3988052 ~ 3988123 (+) | True | trnad-guc_14 |
