RNA id: XM_034313406.1


Basic Information

Item Value
RNA id XM_034313406.1
length 6917
RNA type mRNA
GC content 0.47
exon number 24
gene id suco
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4998148 ~ 5048442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCGACAGCAGGAGGGCCAGAAGCAGCCGAGCAACAGCGAGAGAAGGTCGGATACAGAGCTGTGTACAGGCCAGGCGCGAAACACACACCCCCAGCCCTCAGTCGctgtatttataatttatatactttactaacgtttttttttgcttagctTGTTTCTGAGTTGAGTGCAAACGAACAGGACAGTGCGTGATAAAGAAGCGAGGATGTTGGTCCCCGCGGGAAGATAATgaagaggctgtgtgtgttgttgctgtGCCTCACTGTAGCTCTCCTGTGCTGgtcTTCCAGTCGTCATGTCCAATGTTCAGAACAGCCGTCTTCAGGCCCAGAACTCGCTGCACAGGACGGTAGCCCGCACGCGACACAGGAGAAGGGGGCTAACGAAAAGGTTGAGGAGGAATGGGAATCAGAGTTATCATACAGCGTGGGTTTGGAGACAGAGAGGGCTGCACTAGAGGAGCAGCTCATACAAGACGCAGCAGAAGAAGACAAACCTGAAAAGGCTGTGAATATAGTAGAGCAGGTGGTGGAAGAGGTAAACGTTGTGCCGGAAACACAACCAACAGAGGCACATCCCAACTCTGACCAACAAGAACCTGCTCAAACACAACCCCCaccatcatcgtcatcgtcTCAGTCATcgttaccatcatcatcacctccACCACATCAAGTGGAGACAGAGCTCCCTAAGGCCTTGCCTTCTCTGgaccacactgctgctgctgctgatacTTCTCCACCTGCTGAACCATCCTCAGATCTCCACATAGACCCAAACACTAATGCGGATGTCAGCGCTGACTCCGGGAATTCACTGGAACCAGCGCCACCTACCTCACACACCTCCCTGGAAAGCCCCTCCAGTGCACTAGAGGTTGCCAGTGCTGGTGCCCCACTAAAGAACTTTAGTGCCAGTCAGTGTGAGCTGGGCTCTGTGGCCCTCTCCAGCCAGCTCCTTGCCTCTGGCTCCACACTCAGCAGtGTATTGGTGGAATCAGTGGAGAATCAGGATCCAGGGACCAATGCTGACCTGACTGCCTCTCTGGATTCGGCTGAGCCGGACCTCGCAGAGCCGGAGCACACAGTCAATGCCTCGTACCCCCCAGAGGACCAGGAAGTGgtggCTGAACCCGAGGGAGGGACTGATCCCCCTGTCCCTGGTAAAGAGGACATCCCCACCTTTGATGAGTGGAAGAAGAAAgtgatggaggtggaggagaagaaaaGTCAGTCTTTGCACACCTCATCCAACGGCAGCCCCCACCCAGTGAAAAAGATCCAGAAGAACTTTAAGAATAATTACGCCTCTGTGGAGTGTGGGGCCAAAATCCTCGCAGCCAACAGTGAGGCCAAGaGCACTTCTGCCATTCTAATGGAGAATATGGATCTTTACATGCTCAACCCCTGCAGTAATAAGATCTGGTTTGTTATTGAGCTCTGTGAACCGATCCAGGTGAAACAGCTGGACATTGCAAATTTTGAACTCTTCTCCTCCACGCCAAAAGATTTCCTGGTGTCGATCAGTGACAGATACCCGACCAATAAGTGGATCAAGCTTGGCACCTTTCATGCACGTGATGAGCGCACAGTGCAGAGCTTCCCCTTGGATGAACAGATGTATGCCAAATATGTTAAGATGTTCATCAAGTACATAAAGGTTGAGCTGCTCTCCCATTTCGGTTCCGAACATTTTTGCCCCCTTAGTCTGATCAGGGTGTTTGGTACCAGTATGGTGGAGGAGTATGATGAGATTGCTGACTCTCAGTATCCCTCAGAGAGGGTTGAGTACTTGGATGAGGATTACGACCTCCATTTCATAGATTACCCCCCAGGATACCTTCCATCTGAAGACAAGGCATCAAAGAACCTCCTGGGTTCTGCTACAAatgcAATCCTAACGATGGTCAATAACATTGCTGCGAATGTGCTCGGGGGGAAGCCAGAGCTTGAAGATGGAGCTCAGATGGAAGGTAATATGTCATCAGGGACCGAGAACATCACAGAAGTCACCGAAACTACACCAAAACTCACACCAACCCCGACACTCACGCAGCAACAAGAAATGCTGCAGACTCCAGAACTGGATTCCACTCTGGTGAAGCCGGATCCAGAAGTACCCATTCCCGAGTCTCCCTCTACTCCTTCACCTGAGGAGAGTCGCATTGTTATCCTCattgaagatgaagaggaagagcCAACCCCACCCACGGTGACCCTACTGGAGGAGGAACGTGATGAGGAGAGGCGTCGCGAAGAGGCACATCTCAGGGAGAGCGCCTTTTACTGCTCTCATCTTTCCACTTTGTCCTGCCTAGCCAGCCTCCATGAGCACCTCCACCTCTGCTGTTCGGCTGTGCTGGCTCTGCAGCGGCTACGCCGAGAGCGTCACGCACATGCCAACTCAAACACACTATCAACAACGCAAGTCCCAGACCCCAATCTAAATCAAACCCCCTTGTCACCCTCTGAGAAGTCTTCGGAAGTAGAGCCGACACAAAGTGAAGAGACTGCGCCTGCAGACACGCCCCCTGTTACTCTGgatccaatcactgatcccccAATTTTATTAGAGCCAAGTCATACCTCCTCCCTTCCCCATCACAGCTACTCTGAGACTTCTCTCTTCAAAGCCACGCCCACTGAGGGCATTCCTGACTCTCTGCCCACAGATGAGCCCCAAGATCTGATACCACGATACATTGAGCGCGTAACCGAAACGCAGACTCTCACCTTTAGCAGCACCTCTCTCGGTTCCGCCGTCATTTCCACCACCTCCTTCATCCTCACTCCCACCGCTTCACTTCTCATCCCTGAGTCAACAGAGCTCCCCACGCCCACCAAAGAGCAGCCTGTCCATTCCATTCCCACACACATCCGGCCTACAGAAATCCCACCTCCCACAGAACTGCCTGTGCCTGGCCCAGAGCCTTCTGCAGGCATTGAGGAGCAGCACGATGCTGCTCACCTCGCTTCTCAGGAAGAGCCTATGGAGGAGGTGCAGAGCACACTACAGCGCACCGCCACAGACTTCTACGCTGAGCTGCAGAACTCAAGCGAGCCGAGCTATGGGAACGGCAACGGCAACCACGTGCATGGCTCCAACCAGAAGGAGTCAGTGTTCATGAGGCTTAACAATAGGATCAAAGCCCTGGAGATGAACATGTCGCTCAGTAGCAGATACCTGGAGGAGCTCAGCCAGAGGTATCGTAAACAAATGGAGGAGATGCAGCGGGCGTTCAATAAGACCATCATTAAACTGCAGAACACTTCCAGAATCGCAGAGGAGCAGGatcagaaacagacagaggcCATCCAGATGTTGCAGAGCCAGCTGGAGAATGTTACCAAGCTCATGCTTAACCTGTCTGTCACTGTGGGCCAGTTACAGAgagagGTGTCGGACAGGCAGAGTTACTTGGTGGTGTCTCTGGTGTTGTGTCTGGCTCTGGGCCTGCTGTTGTGTATGCAGTGCTGCTGCAGCTCCTCCAATAACAGAAGCTCTTCGATCCCCGTGAGCAACCACTACCCCAGTCCcaagagGTGTTTCTCCTCTTATGATGACATGAGTCTGAAGCGGAAAACTTCATGCCCTCTCATACGGTCCAAATCATTTCAGCTTCCCCCTTCAGATGTAGGTCCTGATGACTTGTACATTGTAGAACCTCTAAGGTTTTCTCCAGAGAAAAAGAAAAAGCGCTGCAAAATGAAAGGAGAGAAAATGTCTGTGACAGTTGCTAACTGCAGCCCTGAAAGGGAGAGTGTAAGCATGCCTCAGTTCCTGCCAACAACCTGCGACGGCGACGCATCCACCTGCTCATCCAGAGGGGTCGTAGCCGAGGGCAGCTCTGAAGgctcatcttcctcctcctcctcatctaCAGCATCGGATGAGTCCAGCTCCAGCATCCCTTCCGTTAACGGCCACTGTGTGGGTCTAAATAACGGGCAGCTCCCAATGGCCAAGAGCAAGACAGAGAAGAGGTCTTTTAAGCGCAGGCGGTCTAAGATGGCTGATCAGCAACAGCAGCCACAATCACATGGGCGCTATGGGGCAGGGTTACTGCACACCCCACTTCCAGTGGCAACGTGCGTCATGCCGACGCTTCAGCAGCTGATGAAGGGAAAACAGGAACTCGGCATGGGGACTTTTGGAGTAACGGCTGTCACTGGCCATGTCTGAGAACCCTTTCTTCAGCACTATATCACACACTCGTGTAACACACAGCTTTATAGACTGAAAAAGTGATTGAAGCGCTCCGTCAGCTAGGAGGAAAGGGGCGGAcgtttttgtgttgtgttttttctcactctttctctctttctcttccttcctctcacACTATTCACTGAGCCAGACTCTGCCACGTATGCTCAAGCACAGAGAGAAATTTGGACTCCACGACAGTAACACGACCCTCGTTTCTCTCAAGTATCTCTATCCTTTCGTTCTAAAATCCTCTCCTCTTTTATGTGCCTTTATTTGTCCGTTAACAAACTAAAAACAGACCACAGATCAAGGTGAAGGGTCCTTATattgttttctgtcatttttggagagaaattctattttatttctaaacgGGGTgggatacaaaaaaaatgactaacTTTTGAGAAGTATGACTGAGTCTCTGAGtctctgagatttttttttttttttttttttttttttaaataatacacaagTGGACCAGCCGGACAGCAATGGAAGGCCAGGAGTGGACTTTCTCCAGACTCTCTTCCTACACACTACCACAGATCTCTGTCCACTCTCTTCCTTTCACACCCACTCTGATTTtcagtatggtcagtgttagCTTCATTCTCTAGTGTTCACACTTTCCCCTCGGTTGTTGGGAAAcaagtttatttttactttcacacTCCCTCTTGTAGGCTCTTTCTtctgtgtgggtgtatgtgtacCTCTAGTTGTGTCTAGTCATTGTGTAGTGGGACcagtgtacatgtgtgtgtatgtgcgttagtgtgtgtgtgtgtgtgtgtgtgagtgtatgtgcatCACGTAGCAAGTGGCTCTGTAGCACTTTAACATCCATCAGTCCAATGAGCAGAACTGAATGAAGAACAGATCCAGCCATTTTCCTTgccttttcatttttctctctctctctctctctctctctctctctctctctctgtgatttGAAGTGTTAATTTAACAAGTTCAGGCAGGGCCTGAACTCCGCAAACTTAAACACACACGTATAGATTGGAaagacacaataatagaagTTATGAAATTCATTCAGGCATTTTACTGCAGACTCCAGACTCCAGGTTGTTTCTTCAGCTTTCTGTGCTTTTAGACAGCTTTAGTTCTTTTATGACAGTGAGGCAAGTTTATTCCTAGTTTTATTCCAAATGGCCAGTTCCATGTACATATCTGTTACaggtacaaataaataaatacataaataattctATATATATTGTTTGTCCTGACCCCCCTGCACAGTGAACTCTGTgtgtactgttttatttatatatttatttattacaatgtCACTGTTGACTTGGGTTGAACTTAAGGTCATGGGTTAACAGAGGACGTTTTAGCCCTTACAGTGCCCCTGTGGGGTGTCCTCAATATTTATTGAAAATCAGTATTGTGCACATGcgcatgtgcgcacacacagaatacacacaccaaGTTGTGAAACATGCAATGGTACGCCTGTGGTTTTCTCgttttcttccttcctctttaTGTAATTCTGAGAAGCTGGAGTCTGAGCGCTAGCCAAATGCCAcccactacacatcacacacatccttAATATTTGACTAGTTTCATTATCATTATTCTTAGTATTCCTAGTATGTGATGAGCCAGATGTCAGACACTGGGTAAAACACATGCGTCTGGCTCTTcctgaggagagaaaaaaaaaaaagccattttgtgTTATAGGTGTTTGTTGATGGATCTGTTCGGATGAGTTCTTCATTGTATTGGTTGCAATTTTAAGaatcctttgtgtgtgtgtggaaagctgctgttcctgctgaTTTCTAAACTTGTATCTTTCTCATTCCTATGTACGCCACTGTGCATGAAGCCACACCTTTATTGGCATTCTTTTACTGTGTCATGTTCTCTTTGTCTGTCACTTTTATCTGtgtccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctccgtCTTTGACTGGCTCACTGGACCGCTCAACAGCCCACTCTAGATTTATGCCATTAAGTCATTTGTTCATGTGTAGTGTCTTTAGTCGTTTGGGTAAttttttcactcattcatttcacCTTGTCTCTGATCAGTGCTTTCGAAGGAATGTGAACTTTGTCTGAATGGTAACAAAGGGAAAGGTTCAGGTGGTTTTGAACACACCATCTAAATGTGATTTCACTGAGTTATTCCACATTCAGAGGGAGGTTTTATAATGTTCTCTGTTTAATCATGTTCTCCTTTCTATATTGTTTTGAATGTATATGAAAATGTACTTGTTTGTAATTTGTTTCGAGTGTGTATGGGTGTTTTAAACTGTGTGGAAGAAGATTAATTAACCATATAACCCCAGTGATTAGAGCCCTGTGTCTCAGGCTCTCACTCCCTCAGCACTTTGGAGAACTCctcatgcctttttttttttttttttttttttttattattaaatacactaGCCCTTGTTTAAAGTGCTTCTCCTTCCAATGCTTTTCTTGGTGTCCTCTAGTGGCCATGGGTTTGTGTATTGAAGTGGCCAGTAGAAGATGCCAAATTTTACACCAGATTATCTGTGAGGATGAGacacacagtatttttttttggaaacaggtgtaactgtaactacaatGATGTAGTGCCAATAGAAACTGTGAATTTCTAAATAAAGAcactttttctttcattgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343587 lncRNA upstream 90336 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 97800 4898967 ~ 4900348 (+) True G290030
TU343583 lncRNA upstream 101761 4896122 ~ 4896387 (+) True G290028
TU343551 lncRNA upstream 183352 4808540 ~ 4814796 (+) False G290009
XR_004580165.1 lncRNA downstream 98743 5147185 ~ 5150925 (+) True LOC117599804
TU343799 lncRNA downstream 205075 5253517 ~ 5253723 (+) True G290192
XR_003404604.2 lncRNA downstream 254188 5302630 ~ 5306902 (+) True LOC113545370
TU344029 lncRNA downstream 495676 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 531376 5579818 ~ 5588495 (+) True LOC117599803
XM_034313596.1 mRNA upstream 18748 4941951 ~ 4979400 (+) False dnm3a
XM_034313593.1 mRNA upstream 18748 4941951 ~ 4979400 (+) False dnm3a
XM_034313598.1 mRNA upstream 18748 4941951 ~ 4979400 (+) False dnm3a
XM_034313595.1 mRNA upstream 18748 4941951 ~ 4979400 (+) False dnm3a
XM_034313594.1 mRNA upstream 18748 4941951 ~ 4979400 (+) False dnm3a
XM_026944660.2 mRNA downstream 3588 5052030 ~ 5064149 (+) True scrn2
XM_026944478.2 mRNA downstream 17868 5066310 ~ 5077918 (+) True mysm1
XM_034313881.1 mRNA downstream 30779 5079221 ~ 5097477 (+) True oma1
XM_034313588.1 mRNA downstream 278723 5327165 ~ 5502404 (+) False dab1a
XM_034313587.1 mRNA downstream 278723 5327165 ~ 5502404 (+) False dab1a
XR_004580098.1 other upstream 18748 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 18748 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 19293 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 24087 4941951 ~ 4974061 (+) False dnm3a
trnad-guc_22 other upstream 648269 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580141.1 other downstream 687031 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 1964300 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2540926 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2834776 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2836203 7884645 ~ 7884716 (+) True trnaa-cgc_6