RNA id: XM_034313470.1


Basic Information

Item Value
RNA id XM_034313470.1
length 1509
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC117595662
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20985188 ~ 20990671 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGGTGGTAAAATGTGGAGAAAGATCCAGTGCTGTTTGACCTTTGCCCTCCTGCTGATGGTGGCCTTGGCTGACCACGATGAGGGCCACGATCATGGAGAACATTCAGCagatcatcatcaccatctccACCATGGCAAGGATGAACCCCATCCCAGTCACAATGGAGAAGACGATTCATGCCACAAACTCTCACCTCACAACGCTGACTTCGCCTTCACTCTGTACAATAAACTCTCCAGCCATGCTGACGCCAAGGGCAAGAACATCTTCTTCTCTCCACTGAGTATCTCCATGGCTCTGTCCATGCTGGCTCTGGGAGCCAAGGGGGAGACCCACTCAGAAATCTTCAGCACTCTGGGTTACGGTTCCCTCACAGAGGACCAGGTCAATGAAGCCTATGAGCACCTGCTGCACATGCTGGACCACAGCCAGGAGGCCATGCTGCTGGAGACAGGAGGTGGTCTGGCTGTGTCGGAAGGCTTCAAACCTGTCGACAAGTTTCTGAAGGATCTTCAGCACTTCTACCGTACAGAGGCCTTCAGTGTGGACTTTTCCAAACCTGAAGTTGCTGTCGAAGAGATCAACAAGTTCATCGCCAAGAAGACCAAGGACACCATCACTGACATGGTCAAGAGCCTGGACCAAGACACCATCATGGTGCTCATCAACTACATCTATTTCAGAGGTAAATGGGAGAAGCCCTTTGAGGTGGAGCACACTCACAAAGCTGACTTCCACGTGGATGAGAACACCAAGGTGACTGTGGACATGATGAAGAGAACTGGACGCTATGACTTCTACCAGGATCGGGATAACTTCACCTCTGTCATCATGGTGCCCTACAAAGGAAACACCTCCATGATGATCGTTCTGCCTGATGAGGGAAAACTGGACGAGGTGGAGAAGCACCTCAGCAAGGAAGACCTGAAGTACTGGCATGACAAACTATTTAGAAGATTTCTCAGACTTCTTTTGCCCAAGTTCTCCATCTCTGCCTCCTTCTCTCTTGGGGACACTCTAAAGGAACTGGGTATCGTTCAAGCCTTCTCTGACAAGGCCGACTTCTCAGGGATGAGTGAGGAGACCAAACTGAAGGCTTCCAAGGTTCTCCACCAGGCAGTCCTCAAGGTGGATGAGAAAGGAACTGAAGCAGCTGCTGCCACCACCGTAGAGATCATGCCCATGTCTCTACCAAACACCATGAACCTCAACAGACCCTTCCTGGTCTTCATTGTGGAGGACAGCACCAAGAGCATCCTCTTCATGGGCAAGATCACCAACCCTACTGAACAATAACACTCAGATCCCATCTGTCTCAAGCAATCTGAATTTCAAAGATCTACATATTGTGATTTTTCATTATTACACTGGAATGTTTTCCCACTTCAGCAGTGAGGGAGGTGCGGAATTTGCAAAATAGCtttcttcatttgtttaaaataaaagacagtTCCAATCAGGTGTGTCAGAAGTCCTACATTCAGCatgaataaaagcaataaaaaa

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03984 SERPINA1, AAT; alpha-1-antitrypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354114 lncRNA downstream 35116 20949842 ~ 20950072 (-) True G298934
XR_003402683.2 lncRNA downstream 37830 20932603 ~ 20947358 (-) True LOC113525588
TU354077 lncRNA downstream 96536 20833006 ~ 20888652 (-) True G298906
TU354086 lncRNA downstream 146398 20819372 ~ 20838790 (-) False G298906
TU354085 lncRNA downstream 146549 20754972 ~ 20838639 (-) False G298906
XR_003402597.2 lncRNA upstream 25991 21016662 ~ 21020147 (-) True LOC113524815
TU354201 lncRNA upstream 26037 21016708 ~ 21019893 (-) False LOC113524815
TU354200 lncRNA upstream 27402 21018073 ~ 21018852 (-) True LOC113524835
XR_003402600.2 lncRNA upstream 27855 21018526 ~ 21018795 (-) False LOC113524835
TU354211 lncRNA upstream 31571 21022242 ~ 21022860 (-) True G299005
XM_026911095.2 mRNA downstream 235048 20742070 ~ 20750140 (-) False LOC113524743
XM_026911096.2 mRNA downstream 235048 20742070 ~ 20750140 (-) False LOC113524743
XM_026911097.2 mRNA downstream 235563 20742070 ~ 20749625 (-) True LOC113524743
XM_034313607.1 mRNA downstream 331976 20613722 ~ 20653212 (-) True LOC113524752
XM_034313536.1 mRNA downstream 373919 20593509 ~ 20611269 (-) True LOC113524753
XM_034313850.1 mRNA upstream 5130 20995801 ~ 20999074 (-) True LOC113525589
XM_034313849.1 mRNA upstream 5130 20995801 ~ 20997924 (-) False LOC113525589
XM_034313675.1 mRNA upstream 102806 21093477 ~ 21112429 (-) True LOC113524825
XM_034313609.1 mRNA upstream 129277 21119948 ~ 21126084 (-) True LOC117599722
XM_034313610.1 mRNA upstream 144906 21135577 ~ 21171717 (-) True LOC113524826
trnar-ucu_11 other downstream 25600 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 27465 20957631 ~ 20957723 (-) True trnai-uau_9
trnae-uuc_17 other downstream 234617 20750500 ~ 20750571 (-) True trnae-uuc_17
TU354008 other downstream 320648 20655999 ~ 20664540 (-) True G298875
TU353922 other downstream 543100 20440866 ~ 20442088 (-) False LOC117599698
TU354232 other upstream 82255 21072926 ~ 21073676 (-) True G299022
trnae-uuc_18 other upstream 219511 21210182 ~ 21210253 (-) True trnae-uuc_18
trnav-uac_10 other upstream 741518 21732189 ~ 21732261 (-) True trnav-uac_10
TU354804 other upstream 981410 21972081 ~ 22067550 (-) False srsf5a
TU354827 other upstream 1005443 21996114 ~ 22000833 (-) True G299449

Expression Profile