RNA id: XM_034313501.1


Basic Information

Item Value
RNA id XM_034313501.1
length 1128
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC117599677
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1259176 ~ 1264632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTCAGGAGAAAGACCAACGGATGATGAACATGTTCGCCCTTGTCGAGTGGAAAGAAGAAACGGATAATGAAAGTTGGAGCATTGTTCCAACGTCACACATAAAAAACTTCGATAATAATGATTTCTTAGACGGACTGGATGACACATCCGTATATTTAATTAAGTGGAGAGGAGGACTGAAGAAAAAACCTAAAGGCGGATGGCCTTTGTACGAGGCAACGGTGCATAAAATTGCAGagaAACAGTGCACCCTAGAAAAACTAATGAGGACACAACGTCAGTCCAGTCCAAAACTTCtgagcaaaagaaaatgcaggCCAAACCCTAAGTTTGTTGAAGAGGAGACCAGCAATGATGGACCATCTAGCCCCAAAAAGAGGCAAACTAGTGATGGAAATTTGGACAGGGAGCttttggagaaaataaaattaccCCATGGACCTCGATTCCCTTCAGCTACAACTTCAGTTGTTCCACCTTCACCTACCTCACCATCTTCTGCCTCACCACCGCTGCCTAACTGTCCACCTACACCACCATCAGCTCCATCTTCACCTGCCTCATCATCGTCTGCTTCACCTCCACCTACCTCACCTTCTTCTGATCCTCCTTTGCCAGACATCATAGCACAATTAAAGGCAGAAAATGAAGCCCTCAAAATGGAATTAGAGAATCTAAAAACAAATGTTGTCAGTCAAATGCCAAAACTCCTCAGTATAATGTGCAAGCTGGGGGAATGGCTTGAAGGGAAGGAGCAGAGCCCACAGAAACAACTGGCATCACCTTCCACCATACAGGAAACTGTGGCAAGTCCAAAAATGCAAGCCCTGGGGAAACAAAAGTGGCCTTGGACAGAACAAAAATTGATGCAATAATTAGTATGTACATCACTTGGTTAATTgggctcatttttttttttacagttgtgTTAAACCAAATGTGACAATAAAACCATCAGAATTTATCAGTTTCATCTTGGTGTATCAGTGTGATGACACTTTACACCTGGTTCTGAATAATGCCTAAATTTCAGAAACATTCAGTTTATCTACCTAACGAAGTACGTCCTGTGTtaatttagtgtgttttagGTGATTATAATTTGAATGtccttaaataaatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340985 lncRNA upstream 17109 1241861 ~ 1242067 (+) True G287891
TU340963 lncRNA upstream 74813 1184083 ~ 1184363 (+) True G287872
TU340887 lncRNA upstream 252170 1005667 ~ 1007006 (+) True G287817
TU340884 lncRNA upstream 268741 990210 ~ 990435 (+) True G287814
XR_004580134.1 lncRNA upstream 332537 926233 ~ 926639 (+) True LOC117599769
TU341067 lncRNA downstream 169923 1434555 ~ 1435138 (+) True G287962
TU341152 lncRNA downstream 188943 1453575 ~ 1453870 (+) True G288036
TU341154 lncRNA downstream 190338 1454970 ~ 1455834 (+) True G288038
TU341156 lncRNA downstream 191276 1455908 ~ 1456374 (+) True G288039
TU341157 lncRNA downstream 191316 1455948 ~ 1456374 (+) False G288039
XM_034313889.1 mRNA upstream 51137 1203513 ~ 1208039 (+) True LOC117599792
XM_034313794.1 mRNA upstream 223080 1014884 ~ 1036096 (+) True slc5a6a
XM_026947247.2 mRNA upstream 223080 1014884 ~ 1036096 (+) False slc5a6a
XM_034313780.1 mRNA upstream 361890 897000 ~ 897286 (+) True LOC117599763
XM_026911740.2 mRNA upstream 397686 859667 ~ 861490 (+) True LOC113525267
XM_026928048.2 mRNA downstream 29150 1293782 ~ 1332827 (+) True fam102bb
XM_034313890.1 mRNA downstream 75876 1340508 ~ 1344631 (+) True LOC117599793
XM_026928286.2 mRNA downstream 93569 1358201 ~ 1360116 (+) True srp9
XM_034313722.1 mRNA downstream 99452 1364084 ~ 1379201 (+) True olfml2ba
XM_034313723.1 mRNA downstream 99452 1364084 ~ 1379201 (+) False olfml2ba
TU340986 other upstream 15504 1243057 ~ 1243672 (+) True G287892
TU340640 other upstream 360766 807193 ~ 898410 (+) False LOC117599757
TU340615 other upstream 367168 812277 ~ 892008 (+) True G287628
TU340603 other upstream 427196 806306 ~ 831980 (+) False G287625
TU341023 other downstream 93554 1358186 ~ 1359362 (+) False srp9
TU341376 other downstream 732165 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 868526 2133158 ~ 2141637 (+) False LOC113546780
TU341918 other downstream 1225045 2489677 ~ 2496052 (+) True cnstb
XR_003404755.1 other downstream 2100646 3365278 ~ 3365402 (+) True LOC113546887

Expression Profile