Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580082.1 |
| length | 955 |
| RNA type | misc_RNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | LOC117599677 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 1259176 ~ 1264632 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU340985 | lncRNA | upstream | 17109 | 1241861 ~ 1242067 (+) | True | G287891 |
| TU340963 | lncRNA | upstream | 74813 | 1184083 ~ 1184363 (+) | True | G287872 |
| TU340887 | lncRNA | upstream | 252170 | 1005667 ~ 1007006 (+) | True | G287817 |
| TU340884 | lncRNA | upstream | 268741 | 990210 ~ 990435 (+) | True | G287814 |
| XR_004580134.1 | lncRNA | upstream | 332537 | 926233 ~ 926639 (+) | True | LOC117599769 |
| TU341067 | lncRNA | downstream | 169923 | 1434555 ~ 1435138 (+) | True | G287962 |
| TU341152 | lncRNA | downstream | 188943 | 1453575 ~ 1453870 (+) | True | G288036 |
| TU341154 | lncRNA | downstream | 190338 | 1454970 ~ 1455834 (+) | True | G288038 |
| TU341156 | lncRNA | downstream | 191276 | 1455908 ~ 1456374 (+) | True | G288039 |
| TU341157 | lncRNA | downstream | 191316 | 1455948 ~ 1456374 (+) | False | G288039 |
| XM_034313889.1 | mRNA | upstream | 51137 | 1203513 ~ 1208039 (+) | True | LOC117599792 |
| XM_034313794.1 | mRNA | upstream | 223080 | 1014884 ~ 1036096 (+) | True | slc5a6a |
| XM_026947247.2 | mRNA | upstream | 223080 | 1014884 ~ 1036096 (+) | False | slc5a6a |
| XM_034313780.1 | mRNA | upstream | 361890 | 897000 ~ 897286 (+) | True | LOC117599763 |
| XM_026911740.2 | mRNA | upstream | 397686 | 859667 ~ 861490 (+) | True | LOC113525267 |
| XM_026928048.2 | mRNA | downstream | 29150 | 1293782 ~ 1332827 (+) | True | fam102bb |
| XM_034313890.1 | mRNA | downstream | 75876 | 1340508 ~ 1344631 (+) | True | LOC117599793 |
| XM_026928286.2 | mRNA | downstream | 93569 | 1358201 ~ 1360116 (+) | True | srp9 |
| XM_034313722.1 | mRNA | downstream | 99452 | 1364084 ~ 1379201 (+) | True | olfml2ba |
| XM_034313723.1 | mRNA | downstream | 99452 | 1364084 ~ 1379201 (+) | False | olfml2ba |
| TU340986 | other | upstream | 15504 | 1243057 ~ 1243672 (+) | True | G287892 |
| TU340640 | other | upstream | 360766 | 807193 ~ 898410 (+) | False | LOC117599757 |
| TU340599 | other | upstream | 361814 | 806306 ~ 897362 (+) | False | G287625 |
| TU341023 | other | downstream | 93554 | 1358186 ~ 1359362 (+) | False | srp9 |
| TU341376 | other | downstream | 732165 | 1996797 ~ 2008806 (+) | False | ptchd4 |
| XR_004580079.1 | other | downstream | 868526 | 2133158 ~ 2141637 (+) | False | LOC113546780 |
| TU341918 | other | downstream | 1225045 | 2489677 ~ 2496052 (+) | True | cnstb |
| XR_003404755.1 | other | downstream | 2100646 | 3365278 ~ 3365402 (+) | True | LOC113546887 |
