RNA id: XM_034313652.1



Basic Information


Item Value
RNA id XM_034313652.1
length 1292
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC117599727
representative False

Chromosome Information


Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10170792 ~ 10186791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TCATTTCCTGGACTTGCCTCCAACAAGGTGGGACTCAGAGGGGAGGGGGCGCTGAGAAATGATATAAagtcacacacactgaagaacACACATGACGTTTGATCAGAAACCGGATCACTTGTGCAGTGCAGGAGCCGCGATTTTGCAAAATGGACTCTGGTTCAGTGGCAAACAACTACTTTGCCCTTCAGCTGTTCAGCAAGATCAAGGAAGGCAACAAATCCAACAATGTCTTCTACTCTCCTCTCAGCATCTCTTCTGCCTTGGCCATGGTGTCTCTAGGAGCTGCAGGCAACACAGCAGCTCAGATGGCTGAGACTCTGCAACACCACAAAGCCAAGGACGACATCCACGTCAGCTTCAACAAGCTGATGAGTGAACTGACCAAAGCAGGGGCTCCGTATGCCCTCAGCCTGGCCAATAGGCTTTATGGAGAGCAGACCTACCAATATGTGGAGaaatttttgagtgacacaaaaaaacactacaatGCTGATCTGGAAACTGTTGACTTTAAATCAAATGCAGAAGCTGCACGTGTCAATATTAATAAGTGGGTGGAGAAGCAAACAAAAGAAAAGATCCAGAACTTGCTGGCAAAAGGAACTGTTGACAGTTTGACCAGACTTGTCTTGGTGAATGCCATCTACTTCAAGGGCAGCTGGGAGAAGCGGTTTAAGGCAGAAGCAACAAAGGAACATCCTTTCAAGCTGAACAAGAAAGAAACTAAACCAGTGCAGATGATGACTCAGAAGTCAAAGTTTCCCATGGCCTTTATTCCTGAGGTGCAGTGCAAGATTCTTGAAATGCCATATATAGGCAACGAGCTCAGCATGCTAATTATGCTGCCTGTTGAGATTGAAGATGATACTACCGGCCTTAAGAAGCTTGAGCAACAGCTCACCTATGAGAACTTCAAGGAGTGGACACGGCCCGATATGATGGTCAttgaggaggtggaggtgtcTTTGCCGCGGTTCAAACTGAGTGAAACCTACGACATGAAGGAGCTGCTCAAGAGCATGGGCATGGTAGATGCCTTTGACATGGGCAAGGGTGATTTTTCACGCATGTCTCCTTGCAATGATCTGGTGCTCTCCAAGGTGTTGCATAAGTCTTATGTAGAGGTGAATGAGGAAGGCACTGAAGCAGCCGCGGCTACCGGGGCCGTCATGATGACGCTTTCTCTCAGGCTTCCAAAGGCTTTTGTGGCAGACCACCCCTTCCTCTTTTTCATTCAACACAAACCAACCGGAAGCATTCTCTTTTGTGGACGCTTCAGCTCCCCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU347278 lncRNA upstream 106781 10063765 ~ 10064011 (+) True G293110
TU347253 lncRNA upstream 132437 10036451 ~ 10038355 (+) True G293095
TU347065 lncRNA upstream 302183 9868149 ~ 9868609 (+) True G292929
TU346860 lncRNA upstream 554201 9613425 ~ 9616591 (+) True G292754
TU346862 lncRNA upstream 558180 9611988 ~ 9612612 (+) True G292756
XR_004580103.1 lncRNA downstream 12241 10198849 ~ 10210998 (+) True LOC117599717
TU347561 lncRNA downstream 350356 10536964 ~ 10537640 (+) True G293350
TU347551 lncRNA downstream 365633 10552241 ~ 10553007 (+) True G293345
TU347592 lncRNA downstream 374189 10560797 ~ 10561016 (+) True G293380
TU347623 lncRNA downstream 423018 10609626 ~ 10609846 (+) True G293411
XM_034313908.1 mRNA upstream 53 10159027 ~ 10170739 (+) True LOC117599798
XM_026944413.2 mRNA upstream 30456 10136989 ~ 10140336 (+) True LOC113545207
XM_026944512.2 mRNA upstream 49492 10091369 ~ 10121300 (+) True exoc2
XM_026944679.2 mRNA upstream 144868 9945790 ~ 10025924 (+) False gmds
XM_026923687.2 mRNA downstream 179560 10366168 ~ 10374001 (+) False katnbl1
XM_026923688.2 mRNA downstream 179843 10366451 ~ 10374001 (+) True katnbl1
XM_026923689.2 mRNA downstream 180826 10367434 ~ 10374001 (+) False katnbl1
XM_026922696.2 mRNA downstream 187955 10374563 ~ 10378224 (+) True emc7
XM_026923090.2 mRNA downstream 197056 10383664 ~ 10412148 (+) True aven
TU347333 other upstream 9041 10158955 ~ 10161751 (+) False LOC117599798
TU347160 other upstream 220061 9903750 ~ 9950731 (+) True G293016
XR_004580138.1 other upstream 1009891 9074028 ~ 9160901 (+) False LOC113545247
TU346212 other upstream 1173796 8993513 ~ 8996996 (+) True G292216
trnak-uuu_18 other upstream 1279052 8891668 ~ 8891740 (+) True trnak-uuu_18
TU347771 other downstream 832308 11018916 ~ 11024973 (+) False G293528
trnai-aau_1 other downstream 957279 11143887 ~ 11143960 (+) True trnai-aau_1
trnai-aau_2 other downstream 958331 11144939 ~ 11145012 (+) True trnai-aau_2
trnai-aau_3 other downstream 959383 11145991 ~ 11146064 (+) True trnai-aau_3
trnai-aau_4 other downstream 960426 11147034 ~ 11147107 (+) True trnai-aau_4

Expression Profile


XM_034313652.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_034313652.1 Expression in each Bioproject

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XM_034313652.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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