RNA id: XM_034313675.1


Basic Information

Item Value
RNA id XM_034313675.1
length 3155
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC113524825
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21093477 ~ 21112429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctggagaaggagacatgacctccaacatgagtgtgtctggaaaacaggacttaaagaaagacgagagaatgatggagggaaaaagATCAgcctcaccagaacccagctgtgtgtccatgaagagtgactgGTCAAAGGATCATCCAATTGAGTTCAGAGATGGAGACAATTCTACTCATctgagaatgatggagggaaaaagATCAgcctcaccagaacccagctgtgtgtccatgaagagtaaTGAGTCAATGGGACATCCAATCGagttcagagacagagacaattCTACTCATctgagaatgatggagggaaaaagatcagactcaccagaacccagctgtgtgtccatgaagagtgaagAGTCAATGGGACATCCAATCGAGTTCAGAGATGGAGACAGTTCTACTCATctgagaatgatggagggaaaaagatcagactcaccagagcccagctgtgtgtccatgaagagtgaagAGTCAATGGGACATCCAATTGAGTTCAGAGATGGAGACAGTTCTACTCATctgagaccacaaaagaagaaatcaacCTCAGACCTCAGCGGAAATCAGTCggagtccatattcaaggagCTGCACgtgctgaagaacatgaaccacacagatctcgctaacacactgcagaacaagtctCTGGGCTCTGAGTATCAGCAAAAACTCAAAtccaacctgagagagaaatgcaAAAGAATTAAAGAAGGAATCTCACATtatggaagctcagcacttctgagtgagatctacacagagctctataTCACAGAGGGCTGGAGTGGAGatgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatgacctctttaaagacaagtctaTAAGAAGTGTggtgactaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggacgtcaccttcatgtttccacttccctttagagagctgaatttgatgaagcaggaaaatctcagtctgatgaaactTATTCAtgactttttcccagaaatgagaaaactagaATTATTAGACTGCAAGTCCTACAAAGTGATGTttatctttgatggtctggatgagtgtcgacttcctctaaatttccagcgCAATaggagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagagTGTAAACCAGGTAACAGAAGTACGAGGGTTCaatgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagagtctggccaataaaatcatcacacacattaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatctcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacatgattttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccaaatcttcagaaatgagtttgggcttcacctggggaaggtgttcagctttgtacatctgagtgttcaggagtttctggctgctttatatgcatttctctccttcatcagcagaaaCATAACAGAACAACCAACtactgatctgtctgatcttttcagcAAGTCacacatgtctgatttcctcaggagtgcagtggacaaggccttacagagcgAGAATGGAgacctggacctgttcctccgcttccttctgggtctttcactggagtccaatcagactctcttaagaggcttaatgccacagacaggaagcagctctcacaacaaacaggaaacagtggAGTACATCAAagagaagatcagggagaatccatctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtacaaacttaCCTGAAAAGAGGAGGTTACCGTCGTCTCAGTGGAACCAGACTGTCTCCTGCTCaatggtcagctctggtgtttgtgttaatgaactcagaacaggagctggatgTGTTTGATTTGAGTAAATATGACCCATCAGAGGAATGCTTTCTGAGGTTGCTGCCACTGTTCAAAGGCACCAGAAGAGCTAAgctgcgtgattgtaatctgacagaggaaagctgtagagttctgtcctcactTCTCAGCTCagactcctccagtctgagagaactggatctgagtcacaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagaaactgagtctgcgtgtgtgtgatcTCATGGAGGAAAGCTGTACAGTTCTGTCCTCTGCTCTcggctcaaactcctccagtctgagagaactggacctgagtcaCAACAAACTGcgggattcaggagtgaagctgctctctgctggactgaagAATCCAAATTGtaaactggagatactgaggCTGCGTGACTGTGATCTgtcagaggaaagctgtagagttctgtcctcagttctcagctcaaactcttccagtctgagagaactggacctgagttacaataaactgcaggattcaggagtgacgctgctctctgctggactggacaatccacactgtacactggagatactagggaTGTGGaactgcagtattacagatgaaggttgtgctgctctggcttcagctctgaggtcaaactcctcatcacacctgagagaactgaatctgaaggGTAATAAaacaggagaatcaggagtgaagctgctctctgatctaaaGGAGGATCCAacctgtaaactggagacactactgTAAGTTACTCTCTTAttgtctctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354239 lncRNA downstream 10651 21082521 ~ 21082826 (-) True G299026
TU354229 lncRNA downstream 22366 21070837 ~ 21071111 (-) True G299019
TU354228 lncRNA downstream 24539 21068714 ~ 21068938 (-) True G299018
TU354214 lncRNA downstream 64334 21024124 ~ 21029143 (-) True G299007
TU354211 lncRNA downstream 70617 21022242 ~ 21022860 (-) True G299005
TU354256 lncRNA upstream 3203 21115632 ~ 21117306 (-) False G299032
TU354247 lncRNA upstream 14978 21127407 ~ 21132002 (-) True G299032
XR_004580112.1 lncRNA upstream 69511 21181940 ~ 21185632 (-) True LOC117599741
TU354295 lncRNA upstream 147027 21259456 ~ 21279791 (-) True G299070
XR_004580114.1 lncRNA upstream 388228 21500657 ~ 21501712 (-) True LOC117599743
XM_034313850.1 mRNA downstream 94403 20995801 ~ 20999074 (-) True LOC113525589
XM_034313849.1 mRNA downstream 95553 20995801 ~ 20997924 (-) False LOC113525589
XM_034313470.1 mRNA downstream 102806 20985188 ~ 20990671 (-) True LOC117595662
XM_026911095.2 mRNA downstream 343337 20742070 ~ 20750140 (-) False LOC113524743
XM_026911096.2 mRNA downstream 343337 20742070 ~ 20750140 (-) False LOC113524743
XM_034313609.1 mRNA upstream 7519 21119948 ~ 21126084 (-) True LOC117599722
XM_034313610.1 mRNA upstream 23148 21135577 ~ 21171717 (-) True LOC113524826
XM_034313693.1 mRNA upstream 76994 21189423 ~ 21197043 (-) True LOC113524822
XM_034313691.1 mRNA upstream 107457 21219886 ~ 21247185 (-) True kcnk10a
XM_026911168.2 mRNA upstream 107457 21219886 ~ 21245916 (-) False kcnk10a
TU354232 other downstream 19801 21072926 ~ 21073676 (-) True G299022
trnar-ucu_11 other downstream 133889 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 135754 20957631 ~ 20957723 (-) True trnai-uau_9
trnae-uuc_17 other downstream 342906 20750500 ~ 20750571 (-) True trnae-uuc_17
TU354008 other downstream 428937 20655999 ~ 20664540 (-) True G298875
trnae-uuc_18 other upstream 97753 21210182 ~ 21210253 (-) True trnae-uuc_18
trnav-uac_10 other upstream 619760 21732189 ~ 21732261 (-) True trnav-uac_10
TU354804 other upstream 859652 21972081 ~ 22067550 (-) False srsf5a
TU354827 other upstream 883685 21996114 ~ 22000833 (-) True G299449
TU354824 other upstream 920058 22032487 ~ 22067550 (-) True srsf5a

Expression Profile