RNA id: XM_034313774.1


Basic Information

Item Value
RNA id XM_034313774.1
length 543
RNA type mRNA
GC content 0.59
exon number 1
gene id LOC117599756
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 812260 ~ 812802 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGATTGGTTCTTCTGCCACAACGATCTTAGCCAATAAGAGAGCGGCTGTGTTGGCTATATCACGGAGGGCTCGGCGCGTAGTCTTTATTATTTCAGCGTTGTTCGTGGAACAGGTCTGATCATAACCATGAGCGGAAGAGGCAAGACCGGCGGAAAGGCTAGGGCTAAGGCCAAGACTCGTTCCTCCAGAGCTGGGCTGCAGTTCCCTGTGGGCCGTGTGCACAGGCTCCTGCGTAAAGGCAACTACGCCGAGCGCGTCGGTGCCGGCGCTCCGGTCTACCTGGCCGCCGTGCTGGAGTATCTGACTGCTGAGATCCTGGAGTTGGCCGGCAACGCCGCCCGTGACAACAAGAAGACCCGTATCATCCCCCGCCACCTGCAGCTCGCCGTGCGTAACGATGAGGAGCTGAACAAACTGCTCGGCGGGGTGACCATCGCTCAGGGTGGTGTGCTGCCTAACATTCAGGCCGTGCTTCTGCCCAAGAAGACTGAGAAGACCGTCAAGACCAAGTAAACGCGCCCACTGCTGCGTTTGCCAGTA

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006281 DNA repair biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340609 lncRNA upstream 9736 762431 ~ 802524 (+) True G287627
XR_004580133.1 lncRNA upstream 343856 454598 ~ 468404 (+) True LOC113525268
XR_004580129.1 lncRNA upstream 421058 388696 ~ 391202 (+) False LOC117599767
XR_004580134.1 lncRNA downstream 113431 926233 ~ 926639 (+) True LOC117599769
TU340884 lncRNA downstream 177408 990210 ~ 990435 (+) True G287814
TU340887 lncRNA downstream 192865 1005667 ~ 1007006 (+) True G287817
TU340963 lncRNA downstream 371281 1184083 ~ 1184363 (+) True G287872
TU340985 lncRNA downstream 429059 1241861 ~ 1242067 (+) True G287891
XM_034313775.1 mRNA upstream 4556 807227 ~ 807704 (+) False LOC117599757
XM_034313779.1 mRNA upstream 5530 806321 ~ 806730 (+) True LOC117599762
XM_034313888.1 mRNA upstream 294816 511056 ~ 517444 (+) True LOC117599791
XM_034313772.1 mRNA upstream 406314 405152 ~ 405946 (+) True LOC117599754
XM_034313883.1 mRNA upstream 602076 203020 ~ 210184 (+) True LOC117599788
XM_034313777.1 mRNA downstream 6194 818996 ~ 819423 (+) True LOC117599760
XM_034313773.1 mRNA downstream 11875 824677 ~ 826163 (+) True LOC117599755
XM_034313778.1 mRNA downstream 18618 831420 ~ 831846 (+) True LOC117599761
XM_034313776.1 mRNA downstream 19558 832360 ~ 832825 (+) True LOC117599758
XM_026911740.2 mRNA downstream 46865 859667 ~ 861490 (+) True LOC113525267
TU340986 other downstream 430255 1243057 ~ 1243672 (+) True G287892
XR_004580082.1 other downstream 446374 1259176 ~ 1264632 (+) False LOC117599677
TU341023 other downstream 545384 1358186 ~ 1359362 (+) False srp9
TU341376 other downstream 1183995 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 1320356 2133158 ~ 2141637 (+) False LOC113546780

Expression Profile