RNA id: XM_034313776.1


Basic Information

Item Value
RNA id XM_034313776.1
length 466
RNA type mRNA
GC content 0.58
exon number 1
gene id LOC117599758
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 832360 ~ 832825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCATTCTCTCGCAGTCTACaggagaagcagcagcagcaacatgcCCGACCCAGCTAAGGCCGCTCCCAAGAAGGGATCCAAGAAAGCCGTGACCAAGACGGCCGGCAAAGGAGGCAAGAAGCGCAGAAAGTCCAGGAAGGAGAGCTACGCTATCTACGTGTACAAAGTCCTGAAGCAGGTGCACCCCGACACCGGCATCTCTTCTAAGGCGATGGGTATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGTGAGTCCTCTCGTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTGTTGCTTCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCTTCATCAACCCAACGGCTCTTTTAAGAGCCAC

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340609 lncRNA upstream 29836 762431 ~ 802524 (+) True G287627
XR_004580133.1 lncRNA upstream 363956 454598 ~ 468404 (+) True LOC113525268
XR_004580129.1 lncRNA upstream 441158 388696 ~ 391202 (+) False LOC117599767
XR_004580134.1 lncRNA downstream 93408 926233 ~ 926639 (+) True LOC117599769
TU340884 lncRNA downstream 157385 990210 ~ 990435 (+) True G287814
TU340887 lncRNA downstream 172842 1005667 ~ 1007006 (+) True G287817
TU340963 lncRNA downstream 351258 1184083 ~ 1184363 (+) True G287872
TU340985 lncRNA downstream 409036 1241861 ~ 1242067 (+) True G287891
XM_034313778.1 mRNA upstream 514 831420 ~ 831846 (+) True LOC117599761
XM_034313773.1 mRNA upstream 6197 824677 ~ 826163 (+) True LOC117599755
XM_034313777.1 mRNA upstream 12937 818996 ~ 819423 (+) True LOC117599760
XM_034313774.1 mRNA upstream 19558 812260 ~ 812802 (+) True LOC117599756
XM_034313775.1 mRNA upstream 24656 807227 ~ 807704 (+) False LOC117599757
XM_026911740.2 mRNA downstream 26842 859667 ~ 861490 (+) True LOC113525267
XM_034313780.1 mRNA downstream 64175 897000 ~ 897286 (+) True LOC117599763
XM_034313794.1 mRNA downstream 182059 1014884 ~ 1036096 (+) True slc5a6a
XM_026947247.2 mRNA downstream 182059 1014884 ~ 1036096 (+) False slc5a6a
XM_034313889.1 mRNA downstream 370688 1203513 ~ 1208039 (+) True LOC117599792
TU340603 other upstream 380 806306 ~ 831980 (+) False G287625
TU340641 other upstream 11299 807193 ~ 821061 (+) True LOC117599757
TU340601 other upstream 12813 806306 ~ 819547 (+) True G287625
TU340986 other downstream 410232 1243057 ~ 1243672 (+) True G287892
XR_004580082.1 other downstream 426351 1259176 ~ 1264632 (+) False LOC117599677
TU341023 other downstream 525361 1358186 ~ 1359362 (+) False srp9
TU341376 other downstream 1163972 1996797 ~ 2008806 (+) False ptchd4
XR_004580079.1 other downstream 1300333 2133158 ~ 2141637 (+) False LOC113546780

Expression Profile