Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034313779.1 |
| length | 410 |
| RNA type | mRNA |
| GC content | 0.58 |
| exon number | 1 |
| gene id | LOC117599762 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 806321 ~ 806730 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0001503 | ossification | biological_process |
| GO:0048015 | phosphatidylinositol-mediated signaling | biological_process |
| GO:0034080 | CENP-A containing nucleosome assembly | biological_process |
| GO:0045653 | negative regulation of megakaryocyte differentiation | biological_process |
| GO:0000723 | telomere maintenance | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K11254 | H4; histone H4 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU340609 | lncRNA | upstream | 3797 | 762431 ~ 802524 (+) | True | G287627 |
| XR_004580133.1 | lncRNA | upstream | 337917 | 454598 ~ 468404 (+) | True | LOC113525268 |
| XR_004580128.1 | lncRNA | upstream | 415119 | 388695 ~ 391202 (+) | True | LOC117599767 |
| XR_004580134.1 | lncRNA | downstream | 119503 | 926233 ~ 926639 (+) | True | LOC117599769 |
| TU340884 | lncRNA | downstream | 183480 | 990210 ~ 990435 (+) | True | G287814 |
| TU340887 | lncRNA | downstream | 198937 | 1005667 ~ 1007006 (+) | True | G287817 |
| TU340963 | lncRNA | downstream | 377353 | 1184083 ~ 1184363 (+) | True | G287872 |
| TU340985 | lncRNA | downstream | 435131 | 1241861 ~ 1242067 (+) | True | G287891 |
| XM_034313888.1 | mRNA | upstream | 288877 | 511056 ~ 517444 (+) | True | LOC117599791 |
| XM_034313772.1 | mRNA | upstream | 400375 | 405152 ~ 405946 (+) | True | LOC117599754 |
| XM_034313883.1 | mRNA | upstream | 596137 | 203020 ~ 210184 (+) | True | LOC117599788 |
| XM_026910051.2 | mRNA | upstream | 672057 | 120176 ~ 134264 (+) | True | LOC113523954 |
| XM_034313880.1 | mRNA | upstream | 704342 | 85203 ~ 101979 (+) | True | LOC117599786 |
| XM_034313775.1 | mRNA | downstream | 497 | 807227 ~ 807704 (+) | False | LOC117599757 |
| XM_034313774.1 | mRNA | downstream | 5530 | 812260 ~ 812802 (+) | True | LOC117599756 |
| XM_034313777.1 | mRNA | downstream | 12266 | 818996 ~ 819423 (+) | True | LOC117599760 |
| XM_034313773.1 | mRNA | downstream | 17947 | 824677 ~ 826163 (+) | True | LOC117599755 |
| XM_034313778.1 | mRNA | downstream | 24690 | 831420 ~ 831846 (+) | True | LOC117599761 |
| TU340640 | other | downstream | 463 | 807193 ~ 898410 (+) | False | LOC117599757 |
| TU340641 | other | downstream | 463 | 807193 ~ 821061 (+) | True | LOC117599757 |
| TU340615 | other | downstream | 5547 | 812277 ~ 892008 (+) | True | G287628 |
| TU340986 | other | downstream | 436327 | 1243057 ~ 1243672 (+) | True | G287892 |
| XR_004580082.1 | other | downstream | 452446 | 1259176 ~ 1264632 (+) | False | LOC117599677 |
