RNA id: XM_034313849.1


Basic Information

Item Value
RNA id XM_034313849.1
length 1549
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC113525589
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20995801 ~ 20999074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCCACGCTAGCTAGCAGTGTGTGACTGAGGCTCGTGATACGCAAGTGAATGACTTTCTTCCCAATCCTGGCAAGAGGTGGTAAAATGTGGAGAAAGATCCAGTGCTGTTTGACCTTTGCCCTCCTGCTGATGGTGGCCTTGGCTGACCACGATGAGGGCCACGATCATGGAGAACATTCAGCagatcatcatcaccatctccACCATGGCAAGGACGAACCCCATCCCAGTCACAATGGAGAAGACGATTCATGCCACAAACTCTCACCTCACAACGCTGACTTCGCCTTCACCCTGTACAATAAACTCTCCAGCCATGCTGACGCCAAGGGCAAGAACATCTTCTTCTCTCCACTGAGTATCTCCATGGCTCTGTCCATGCTGGCTCTGGGAGCCAAGGGGGAGACCCACTCAGAAATCTTCAGCACTCTGGGTTACGGTTCCCTCACAGAGGATCAGGTCAATGAAGCCTATGAGCACCTGCTGCACATGCTGGACCACAGCCAGGAGGCCATGCTGCTGGAGACAGGAGGTGGTCTGGCTGTCCGAGAAGGCTTCAAACCTGTCGACAAGTTTCTGAAGGATCTTCAGCACTTCTACCGTACAGAGGCCTTCAGTGTGGACTTTTCCAAACCTGAAGTTGCTGTCGAAGAGATCAACAAGTTCATCGCCAAGAAGACCAAGGACACCATCACTGACATGGTCAAGAGCCTGGACCAAGACACCATCATGGTGCTCATCAACTACATCTATTTCAGAGGTAAATGGGAGAAGCCCTTTGAGGTGGAGCACACTCACAAAGCTGACTTCCACGTGGATGAGAACACCAAGGTGACTGTGGACATGATGAAGAGAACTGGACGCTATGACTTCTACCAGGATTGGGATAACTTCACCTCTGTCATCATGGTGCCCTACAAAGGAAACACCTCCATGATGATCGTTCTGCCTGATGAGGGAAAACTGGACGAGGTGGAGAAGCACCTCAGCAAGGAAGACCTGAAGTACTGGCATGACAAACTATTTAGAAGCTCTGTGGACCTGCACATGCCCAAGTTCTCCATCTCTGCCTCCTTCTCTCTTGGGGACACTCTAAAGGAACTGGGTATCGTTCAAGCGTTCTCTGACAATGCAGACTTCTCAGGGATGAGTGAGGAGACCAAACTGAAGGCTTCTAAGGTTCTCCACCAGGCAGTCCTCAAGGTGGATGAGAAAGGAACTGAAGCAgctgctgccaccaccatagAGATCATGCCCATGTCTCTACCAGACACCATGAACCTCAACAGACCCTTCCTGGTCTTCATTGTGGAGGACAGCACCAAGAGCATCCTCTTCATGGGCAAGATCACCAACCCTACTGAACAATAACACTCAGATCCCATCCAATCTAGAACATGCTATGATTGAAGAGCATGTATTTAGTAGTTAGCACTTTCGTTGCAGGATTGGATTTACAGAAACACGTCACAGCTCCTTTCAGGTGTAGCGTGAGCCCCATGTGATCACTGTACgaacaaaatgacacaaagaagaagaagaggttt

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354114 lncRNA downstream 45729 20949842 ~ 20950072 (-) True G298934
XR_003402683.2 lncRNA downstream 48443 20932603 ~ 20947358 (-) True LOC113525588
TU354077 lncRNA downstream 107149 20833006 ~ 20888652 (-) True G298906
TU354086 lncRNA downstream 157011 20819372 ~ 20838790 (-) False G298906
TU354085 lncRNA downstream 157162 20754972 ~ 20838639 (-) False G298906
XR_003402597.2 lncRNA upstream 18738 21016662 ~ 21020147 (-) True LOC113524815
TU354201 lncRNA upstream 18784 21016708 ~ 21019893 (-) False LOC113524815
TU354200 lncRNA upstream 20149 21018073 ~ 21018852 (-) True LOC113524835
XR_003402600.2 lncRNA upstream 20602 21018526 ~ 21018795 (-) False LOC113524835
TU354211 lncRNA upstream 24318 21022242 ~ 21022860 (-) True G299005
XM_034313470.1 mRNA downstream 5130 20985188 ~ 20990671 (-) True LOC117595662
XM_026911095.2 mRNA downstream 245661 20742070 ~ 20750140 (-) False LOC113524743
XM_026911096.2 mRNA downstream 245661 20742070 ~ 20750140 (-) False LOC113524743
XM_026911097.2 mRNA downstream 246176 20742070 ~ 20749625 (-) True LOC113524743
XM_034313607.1 mRNA downstream 342589 20613722 ~ 20653212 (-) True LOC113524752
XM_034313675.1 mRNA upstream 95553 21093477 ~ 21112429 (-) True LOC113524825
XM_034313609.1 mRNA upstream 122024 21119948 ~ 21126084 (-) True LOC117599722
XM_034313610.1 mRNA upstream 137653 21135577 ~ 21171717 (-) True LOC113524826
XM_034313693.1 mRNA upstream 191499 21189423 ~ 21197043 (-) True LOC113524822
XM_034313691.1 mRNA upstream 221962 21219886 ~ 21247185 (-) True kcnk10a
trnar-ucu_11 other downstream 36213 20959496 ~ 20959588 (-) True trnar-ucu_11
trnai-uau_9 other downstream 38078 20957631 ~ 20957723 (-) True trnai-uau_9
trnae-uuc_17 other downstream 245230 20750500 ~ 20750571 (-) True trnae-uuc_17
TU354008 other downstream 331261 20655999 ~ 20664540 (-) True G298875
TU353922 other downstream 553713 20440866 ~ 20442088 (-) False LOC117599698
TU354232 other upstream 75002 21072926 ~ 21073676 (-) True G299022
trnae-uuc_18 other upstream 212258 21210182 ~ 21210253 (-) True trnae-uuc_18
trnav-uac_10 other upstream 734265 21732189 ~ 21732261 (-) True trnav-uac_10
TU354804 other upstream 974157 21972081 ~ 22067550 (-) False srsf5a
TU354827 other upstream 998190 21996114 ~ 22000833 (-) True G299449

Expression Profile