RNA id: XM_034313880.1


Basic Information

Item Value
RNA id XM_034313880.1
length 5169
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC117599786
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 85203 ~ 101979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTAACAATGATATTGCTCTTCAGTTTTCAATTAAAAGTGGATCTTTATCTGATTTGGGGATCAAAGAAATTAGTCCCTGCTTCATTGTGGGTGTCATCTCTCCTTTGTGAATACATTCTTTAAACAAACAATATAAAGGCTGCTTTAAGAGATcccaaaaatgtaaatcaaattCAACAAACAGGCCATCAGTACCTGGAGATTTTCCCCTTTTCATAGATTTCAGTGCCACTTCCATTTCAGTAATAGAAAGGTCAGAGTCACATAGTAATTTATTAACACCTCATTAACACCTGAAACTttatcacagacacacaaaagaaaagaatcacatttttcttGAGAAAACGGAGAAGTATACAGTTCTTTGTAAAAATTGTATACAAAAGTTGAGATCATTCCTGGATCTGTACATAAATCACCATTAATCTTTAGAGCagagagagatgttttttttacgATTTCTTTTCTCTAGAGCAAAAAAGGAATTAGTGTTTCTTTCACCCTTCTCGATCCATTTTGCTCTAGAACGTATGAAAGCCCCTTTAGCAATCTCTGTGTacatattttcaattttcatttGACAGACACTATATTCTACCTCATCCTCTTTACTGGGATAATGTTCGAGATGCTTCGGCACTTCGCGTCTCAGCGTATGACATCAAACTACCGCGAGATGCAGCCCTGCCTCGATCTGCTTGCAGGATGGATCCCGCGAGATTTCATTCAGCAATTCCCCTCCCCCACGCGGCACACCCTGGATCGCGCCGGCGCCGTTACTCACTCACCGCTTTGCTGTCACTTTCGGGAGGAGGCGTTTGCCGTCAGTGTATCCAAGGCACTTCACTTTCAGCCTGAGACCTTCAGTATCAGAAAGGGAAGCCATATTTCAGAACAGAGACTACAACCAGCTTCATCAGAAACATGCCTCACTCGGAGACCATTGACCTGGCTTGTCTTGGCCGACCGTTTCAGCTGGGAATGCTGTATGATTGCAGAAAGGATTCTCTCATTCCAGGAATAACTCTCTGGGACTCTGATATGCTACAGAAGAATATTAATGTACATACACAGCCAAACACTGACTTCAAAATCATTGCTTCAGATTCAAGTGAAGACAAAGCAGAAGCTTTGAATGTCTCTGCATCTCTTGAAGCCAGCTTTCTATGTGGATTAGTCAGTGTGAAAGGCTCAGCTGACTATTTACATGACAAGAAGAAGTCCAAAAATCAGTCTCGAGTCACTTTACAGTATCGGACAACCACGCGTTTTGAGCAGTTAACTATGGAGCATCTTGGAGTAGGGAACGTAAAGCACAGCCATGTATTTAAAGAGGGTTCGGCCACACATGTTGTTACGGCTCTACTGTATGGAGCTCAGGCATTCTTTATCTTTGATCGTGAGGTTTCATCCAGTGAAAGCCATCAAGACATACATGGCGACCTCCACGCAACAATCAAAAAGATTCCTACAATATCAATTGAGGGCCAGGCATCTTTGACCATGAAAGAACTGGACAAAGACAAAATAGACAAGTTCAGCTGCACTTTCCATGGAGATTTTGCTCTGGAAAATAATCCAGTTACTTACGTAGACGCCATCAAGGTGTACTCAGAGCTGCCGAAACTGTTGGGGGGAAAAGGAGAGAATGCTGTGCCCATGACCGTGTGGCTTTATCCTCTGAAAAAACTTGATTCAGCAGCTGCTCAGTTGGTCAGGGAGATCAGCGTTAGCCTGGTACGACGAGCACAACGGATCATGGATGGACTGGATGATTGTGACATTCGGTGTCAAGATCTGATGAGGGACAATGTCGCCATCCAGTTCCCTGAAATCAAAGCCAAGCTCAAAAACTTTAAGGACCTCTGCTCAGAGTACAAAGTCATTTTTCAGAAATATCTCTGCAGGCTTCTTCCATCTATAAGGGGTGGAGGAAAAGAAGAACAGGAGCTTTCAGATTTTctgaacagaaaagaaatgtcCCCATTTCAGGGTGTTCTGATAAATAAGTACCTAAATGAGCGAGAGCGGGAGATCACTGTGGTTGGATCTTACCTCGACATCATGAAAGACATCCCTGTTCTTTCAACCAGCAATGACCTGGACAAGATTGTCTTGAAAGCATCCAATGACTATGTGGTAGCCTTTGCACTCTCCTCCTTAAATGAAAAGGAACTCTACCTTTCAGACTTAAAGAATTACCTTAAACAACAAACAAGTGACAAAGGGGAACAGCCAAGCTATGACCAAAGCTCTACAGAAAGGGCAAAAGAATGGTTTTCTTTGGAAGATGTAACTGCACAGAACAGGGAAAACATACAGGCCTTCGTAGATTTCAAAGAAGCcaataaaggaagaaagaacaTTGAATTCTGCATTGTATCGATCCCAGATGAACTCAGCACTGCCTCTTCAATTCGTGTTTATGAACGAGCAAAACTCATCAGCTCAGAGGACGAGCTTCCCTCAAAACCCCCAATGCCCAATTTCTTGTGCGCCGCGCATGACTGCATACATCTGCAGATCACGCCTCCTGACCACGGCGTTAGTTGTGTGACCTCGTACTGTATTTCATACAAGTCTGCAGAGAGCTCTGAATGGACAGAGGTGTATACTGACGGAATTTCTGATCAGGTCACTGTCAAGCAGCTACAGCCGCATAAAGAATACTGTTTTACCTGTAAGGCAGTGTGTCGTCCAGGTGTGAGTCTGGCAAGTGACAAAACTCAGTTCTTCAAGACCCTTCCATGTGCTCCTCCAGGAGCACCCACAGTCAAAAGAGTAGAATCTGAGTCTGCAACATTAACTTGGGATGTCCCTAAATCTGTGGGTGAAGATATTATGGTCACTGGATACGTGTTGGAATTCAGAGAACGACCAAAGGATCAGGAAACCGAAAAGCCATGGACATCTGTGAAATCTGCAAGCAGGGATTACACTTTTCAGGGACTGAAAGCAAACACAGTCTACACAGCCAGAATTTTTGCAAACTGTGGAAGTGATGGAGTGAGTCTCCCCAGCCCTGAAACTGTGTTTTCTGCATGTTCAAAGAGCAAATCCTCAGACGAGGCTGGAAGTGGATTGTTCCTGGTTCAATCTTCACGCATACAGAAGGGGAATCCTTCAATTTATAAACTGACACTAcgcaaaaaaatgaaagagaatgtAGAGTTTGATCAGTATGTCTTTGGAAAACAGGTGGAggatgtgaaaaacaaagtcATTCTTCTTGTAGGAGCGACAGGTGCAGGAAAAACCATGCTCATCAATGTGATGGCCAACTACATACTGGGCGTAAAGTGGGAGGAAGCGTATCGCTTCAAACTAATCCACGAAGAGACTCATCGCACACAGGCCGAGAGTCAGACATCTATCGTCTCATCTTATGAGCTGTACAGTCAGCCTGGCTTTAAAATTCCCTACCCGCTCACAATCATAGATACACCCGGCTTTGGTGATACAAGAGGAATCGAATATGATAAACTGATTACAAAGCAGCTGAAAAGCTTTCTTTGTAGCCCTTTGGGAATCGATCACATTGATGCCGTCTGCTTCGTCGTTCAGGCCTCTCTGGCTCGCCTGAGTGCCAATCAGAGGTACATCTTTGACTCAATTCTGTCCATTTTTGGCAAAGACATCGGAGAGAACATCATGATTATGGTGACATTTGCAGACAGTGAACAAATCCCAGTCCTGGAAGCCATCAAAGCAGCAGATCTGCCCTGTCAGAAAAATACAAAGGGAGAGCCCATGCATTTCAAGTTCAACAACACAGCTGTGTATGCAGACAAGACCATAAAAGAGCCTACAACCTCTGACAGTGATTCAGATGAAGATGGTGAAGCCAATGGTAATAAACTGTACAACATTGTCTGGACATCGACTTTCAAACAGATGAAGGCCTTTTTCAAGGCACTGGgcaaatctgaaaataaagatcTGACACTAACCAAAAAAGTCCTGGAAGAACGAGAGCGCCTCGAAAAAGCCATGGCAGATCTGACCCCTCAAATCACTGCTGGCCTCACTAAACTGAGAGAAATTAACACAATTAAGGAACGTttgaaaaatgagagaaatagCATAAAACAAAGTGAGGATTTTGAGCAAGAAGTTGAGGTGATAATACCAAGAAGACACCCCATAGATAGTTTTGCCCTGAATTGCAACTTATGCTTATTCACATGCCACTCCACCTGCTTCCTCCCTGCAGAAGATTCTGTGAAGACTTGCGCTGTGATGGATGAATCTGGATGCTGTGTTGTCTGCCCTAACTCCTGCTCTCACACTTTTCATTTAAAGGAAAAGGCAAAGTGGacatatgaaaagaaaatagagaaaaaaaccaTTAACGAGCTGAAAGAAAACTTCATGAAGGCACACGGAAGAATTTTGCAAACACAGGATTTGATTGATGTCCTTGAAAAGGACTTAACTTCAATTCAGGCCAAACTGAGGAAGCTAATCAAAATGTCCTCTGATTGCTTGAATCAACTGAATAAAATTGCACTGAAGGCCAGCTCTCTCTCCACTGCAGAATACCTTGAAATCTTGATCAAAACGCAGAAGGCGGAGAAACGTCCTGGATTTGAAGAACGCATTGTTGAACTCGAgaggattaaaaatgaaattcttcttcagaaaaaaatcacagaaggAGATGATCTGCTCACAGAGGAAGAGCCACCGCCAATGAAATCTGGAGACTGTGGAAATTTGGAGTTCTTAACTTCAGTTTTTAATCATGACAGAGATGAAAATGAAGACTGATGAGTTGTAAAATCACCAGtaagattttaatttttcttcttttttttgcttatataATCACATACAGGTCTGTGTCTGGACTCAGTCAAGAGGCTGACCTTACTATATTCAGCTTTTTAAAACTGGCAAATGGGATTGTGggaatgttattttattttcagatctGGTGCATGTCATACTGCTGTTTAATTGTGAAACATTCCATAATTGAAAAGTGTCAAAATATTGTGGAAAAGTCTGTGAAAATCAACATCAAGCAAGAAAACGAACAAAGTTGTAGATTGATGATGTCTATATTCGTATATTGGTTTATCTATATGTGGTACTATAGTTAAAGGGGTAATATGTGGTTAACAATGAGTTAAATGATTGTGTGATAACtaatcaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580137.1 lncRNA upstream 13302 69710 ~ 71901 (+) True LOC117599771
TU340467 lncRNA upstream 58105 25194 ~ 27098 (+) True G287513
XR_004580136.1 lncRNA downstream 52150 154129 ~ 154563 (+) True LOC117599770
XR_004580132.1 lncRNA downstream 53028 155007 ~ 155595 (+) True LOC117599768
XR_004580128.1 lncRNA downstream 286716 388695 ~ 391202 (+) True LOC117599767
XR_004580129.1 lncRNA downstream 286717 388696 ~ 391202 (+) False LOC117599767
XR_004580130.1 lncRNA downstream 286718 388697 ~ 391202 (+) False LOC117599767
XM_026910051.2 mRNA downstream 18197 120176 ~ 134264 (+) True LOC113523954
XM_034313883.1 mRNA downstream 101041 203020 ~ 210184 (+) True LOC117599788
XM_034313772.1 mRNA downstream 303173 405152 ~ 405946 (+) True LOC117599754
XM_034313888.1 mRNA downstream 409077 511056 ~ 517444 (+) True LOC117599791
XM_034313779.1 mRNA downstream 704342 806321 ~ 806730 (+) True LOC117599762
TU340599 other downstream 704327 806306 ~ 897362 (+) False G287625
TU340601 other downstream 704327 806306 ~ 819547 (+) True G287625
TU340603 other downstream 704327 806306 ~ 831980 (+) False G287625
TU340640 other downstream 705214 807193 ~ 898410 (+) False LOC117599757
TU340641 other downstream 705214 807193 ~ 821061 (+) True LOC117599757

Expression Profile