RNA id: XM_034313883.1


Basic Information

Item Value
RNA id XM_034313883.1
length 1686
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC117599788
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 203020 ~ 210184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGAATCGTCAGTACTCTGAATTCCATACCGGATCGGTCGAGGCCCGGGTTAACAACGACCGCCATCGGTGCCGGTGACCTACAGGGCTTCGGTGGAAATTGGGCTACTGTTGGTCGAAGAagtagaggagggaggagagtgagtagacagagagagaagaggaaaggtaaGAGTGTAGGACTGAGAATAGGAACTCTGAATGTTGGTACTATGACAGGGAAAGGTAGAGAGCTGGCTGatatgatggagagaaggaaggtGGATATACTGTGTATACAAGAGACCAGGTGGAAGGGTAGCAAGGCTCGTAGTATAGGAGCAGGAttcaagctgttttattatggTGTGGATAGTAAGAGAAATGGGGTAGGTGTGTTCTTGAAGGAGGAGTTTGGGAGGAATGTTCTGGAGGTGAAGAGAGTGTCAGACAGGGTGATGAGTCTGAAGTTAGAGATTGAAGGggtgatgttgaatgttgttagTGGTTATGCCCCACAGGTGCTGCCAGATGACTGGGAAACTACTGCAGAAGTGATCAGGGTGACAGGAAGAAAGGTGCTGGGTGTGTCATctggaaggaggaaagaagataaggagacttggtggtggaatgaGGAAGTTCAGGATAGTATCCAGAGGAAGAGGTCAGCCAAGAAGAAGTGGGACATGGACAGGACTGAAGAGAGTAGACAGGAATACAAGGAGTTACAGCGCAGAGTGAAGCAGGAGGCATATGATGAGTTGTACACTAGGTTAGACACTAGAGAAGGACAGACGGACTTGTACAGGTTAGCTAGGCAGAGGGATCAAGATTCGAAGGATGTGCAGCAAAAAGTAGATAAGATTAGAAAGGATGAAGTCAGGAAGGCTTTGAAGTGGATGAAAAGTGGGAAGGCAGTTGGTCCTGACGACATCCCGAGAAGTAGTGTATTAGTGCCGATCTTTAAGAATAAGGGTGACATGCAGAGTTGCAGCAACTATAGGGGGATAAAGTTGATGAGCCATACAATGAAGCTATGGGAAAGAGGAGTGGAAGCTAGGTTAAGGAAAGTAGTGGAAATTTGTGAGCAGCAGTATGGCTTCATGCCCAGAAAGAGCACAACAGATGCAATTTTTgctctgagaattttgatggagaagtatagggatggtcagagggagttggactgtgtgtttgtagacttggAGAAAGCATATGACAGGGTgccaagagaagagctgtggtactgtatgaAGAAGTCGGGAGTAGCAGAGAAGTATGTGAGAGTGGGGCAGGACATGTATGAGAGGAGTAAGACAGTGGTGAGGTGTGCTGTaggtcagacagaggagttcaaagtGGAGGTTGGACTGCATCAGGGATCGGCTCTGAGCCCCTTTCtgtttgctatggtgatggaCCAGTTATCAGAGGAGGTCAGACAGGAGTCTACTTGCACAATGATGTTTGCGGATGACATTGTGATCTGTAgtgagagcagggagcaggtggaggagagACAAGAGTCAGAACTAGAGgcagcagagctgaagatgttgagATTGCAGCTGCTGCACTCATTAGTTGCCGGCAAAGTCGAGTTTCCTCGCTCCGCCTTGCAGCCACGTGTGCTCAGGCTGTCCAAAATGATGGGGGTGTTGAACCGGCGCTGTCCGTTCAACACCCTGCCGGCAGTCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580132.1 lncRNA upstream 47425 155007 ~ 155595 (+) True LOC117599768
XR_004580136.1 lncRNA upstream 48457 154129 ~ 154563 (+) True LOC117599770
TU340466 lncRNA upstream 115129 25194 ~ 87891 (+) False G287513
XR_004580128.1 lncRNA downstream 178511 388695 ~ 391202 (+) True LOC117599767
XR_004580129.1 lncRNA downstream 178512 388696 ~ 391202 (+) False LOC117599767
XR_004580130.1 lncRNA downstream 178513 388697 ~ 391202 (+) False LOC117599767
XR_004580131.1 lncRNA downstream 178515 388699 ~ 391202 (+) False LOC117599767
XR_004580133.1 lncRNA downstream 244414 454598 ~ 468404 (+) True LOC113525268
XM_026910051.2 mRNA upstream 68756 120176 ~ 134264 (+) True LOC113523954
XM_034313880.1 mRNA upstream 101041 85203 ~ 101979 (+) True LOC117599786
XM_034313772.1 mRNA downstream 194968 405152 ~ 405946 (+) True LOC117599754
XM_034313888.1 mRNA downstream 300872 511056 ~ 517444 (+) True LOC117599791
XM_034313779.1 mRNA downstream 596137 806321 ~ 806730 (+) True LOC117599762
XM_034313775.1 mRNA downstream 597043 807227 ~ 807704 (+) False LOC117599757
XM_034313774.1 mRNA downstream 602076 812260 ~ 812802 (+) True LOC117599756
TU340599 other downstream 596122 806306 ~ 897362 (+) False G287625
TU340601 other downstream 596122 806306 ~ 819547 (+) True G287625
TU340603 other downstream 596122 806306 ~ 831980 (+) False G287625
TU340640 other downstream 597009 807193 ~ 898410 (+) False LOC117599757
TU340641 other downstream 597009 807193 ~ 821061 (+) True LOC117599757

Expression Profile