RNA id: XM_034313888.1


Basic Information

Item Value
RNA id XM_034313888.1
length 1017
RNA type mRNA
GC content 0.57
exon number 5
gene id LOC117599791
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 511056 ~ 517444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCCAGTACGGCGGGTGCCACCCCGTTTCTTCATCCCACCCAGCAATAAGGAGGTGAAGCCAGGGGGTAGCGCTGTTCTCTCCTGCGTTGCCACCGGAGCCCCAGTTCCCTATGTCAAGTGGATGACTGGAGAAATAGAGCTCaagaaagaagaggaaatgCCCGTAGGGCGCAACATTCTGCACCTTACCAACATCCGGGAGTCAGCTAACTACACCTGCGTGGCCATGTCTTTCCTGGGAACGATCAAAGCCACAGCGCAAGttacagtcaaagCTCTCCCCAAACCCCCCACGTCTCTGACTGTAACTGAAACGATGGCCACCAGCGTCACCCTGACGTGGGACTCCGAGAACCCGGAACCCGTCTTCTACTACGTGATCCAGTATCGCTCCAAAGCCTCCGACAGCAGCTACCGGGAAGTGGACCGCGTTACAACGACGCGCTACAGCATCAGCGGCTTGAGCCCGTACTCGGTGTACGAGTTCCGCGTCATGGCGGTGAACAACATCGGCCGAGGTCCGCCGAGCGATGCCGTGGAGACTCGCACCAGCGAACAGGCGCCTTCTTCTCCTCCACTGCACGTGCAGGCGCGCATGCTGAGCTCTAGCACCATGCTGGTGCAGTGGGAACCTCCGGAGGAACCCAACGGGCAGATCCGCGGATATCGCATCTATTACACGACCGATCCGGATGCGCAGCTCATCGCCTGGCTGAAGCACAACACCGACAACAACCGACTGACCACAATCTCGGGATTAACCCCAATGTCGCATTACAGTCTCTGTGTCCTGGGCTTCACTTCTGTAGGAGACGGACCTCCATCTGATGTCCTGCAGGTCAAAACGCTACCAGGAGTCCCAGCACAGCCTTCTGGATTTAAGGCCGAAGCCGAACCCGACACCAGGATTAAGCTGAAGTGGCTTTGGCCCGTTCAAGAGCCGATCACTTGGTACGAGCTGCATTACTGGGAGGCCGGAACAGACAATAAGATTCGTGTCACCTTCATCCCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580133.1 lncRNA upstream 42652 454598 ~ 468404 (+) True LOC113525268
XR_004580128.1 lncRNA upstream 119854 388695 ~ 391202 (+) True LOC117599767
XR_004580129.1 lncRNA upstream 119854 388696 ~ 391202 (+) False LOC117599767
XR_004580130.1 lncRNA upstream 119854 388697 ~ 391202 (+) False LOC117599767
XR_004580131.1 lncRNA upstream 119854 388699 ~ 391202 (+) False LOC117599767
TU340609 lncRNA downstream 244987 762431 ~ 802524 (+) True G287627
TU340626 lncRNA downstream 284179 801623 ~ 893504 (+) True G287630
XR_004580134.1 lncRNA downstream 408789 926233 ~ 926639 (+) True LOC117599769
TU340884 lncRNA downstream 472766 990210 ~ 990435 (+) True G287814
TU340887 lncRNA downstream 488223 1005667 ~ 1007006 (+) True G287817
XM_034313772.1 mRNA upstream 105110 405152 ~ 405946 (+) True LOC117599754
XM_034313883.1 mRNA upstream 300872 203020 ~ 210184 (+) True LOC117599788
XM_026910051.2 mRNA upstream 376792 120176 ~ 134264 (+) True LOC113523954
XM_034313880.1 mRNA upstream 409077 85203 ~ 101979 (+) True LOC117599786
XM_034313779.1 mRNA downstream 288877 806321 ~ 806730 (+) True LOC117599762
XM_034313775.1 mRNA downstream 289783 807227 ~ 807704 (+) False LOC117599757
XM_034313774.1 mRNA downstream 294816 812260 ~ 812802 (+) True LOC117599756
XM_034313777.1 mRNA downstream 301552 818996 ~ 819423 (+) True LOC117599760
XM_034313773.1 mRNA downstream 307233 824677 ~ 826163 (+) True LOC117599755
TU340599 other downstream 288862 806306 ~ 897362 (+) False G287625
TU340601 other downstream 288862 806306 ~ 819547 (+) True G287625
TU340603 other downstream 288862 806306 ~ 831980 (+) False G287625
TU340640 other downstream 289749 807193 ~ 898410 (+) False LOC117599757
TU340641 other downstream 289749 807193 ~ 821061 (+) True LOC117599757

Expression Profile