RNA id: XM_034313897.1


Basic Information

Item Value
RNA id XM_034313897.1
length 2746
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC117599795
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3878822 ~ 3885661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAGAGGTGGAATGATGTATATGTGACACAATTTGGGAAGTACAAAGGGAAGTCCTTCCGGTGGCTATTGGAGAATGATATTGGCTACTCTTTGTACTTGTCCAGTAAGGTTGAGGAGGAAGAACGGGCTGGACAGTTCAACCCAGAGGGTCCTTGCAAGGATAGCCTCCTTTCCTTTCTTGAATACTCAAGAAGCTTTAAGGAAATTGAGGATCTCCGGCGATACCTTTCAGAGAGGCCAGACCCAGTACCAGTTTTGTCAGAGGATGACAATGTTGTTGGATTTGGGGCACGAGCACAAGACACCTGGAGGAAGATCTGGAATACCAGAGCTGATGGGTATGCTGCCTTTATAATGGGGAAGAGCGGTGTTCCAGGAAGTAAAATGTACCGCTTACAGCAATATCTTTTAAAGCAGCAAAGACAGGTGACCACAGCCCCTTCTGCTACACCTTCACCCTCACCATCAACTCCCTCTGCACCTTCCACTTCATGCCTTTCCTCTGATCATCCAGtaatggaggaggatgaggaactGGAGAAGATGATGCTGAGTCTGTCTCCACCCAAATGTCCTACACAGCAGAGGTCACCCACAGCCACTGCGTGTCCAGTCTTCTCTGCAGCAGGAGTGTTCTTGCCTGTTCTAAAAATTGCGTTCTTTTTTCTGCCACAGCCACCATCAAGACCACATGCTGTCTGCCATCCTCACACACCACCACCTCCTTTGCCTAGCACTTCCTCTCAGTGCAAATCCCCTGCATCACTGCCCCGAGTACCACcaccagctgtgcagtcagtACCCGCAGCACCTCTACCAGCTGCTCAGTCAGTACCTGCACCAGTGccctccacacagacaggagccCCTGTGTCCAGTGACATGCAAGATATTAGCCGCTGGAACTGCTCCTGCCATCACAAAATCTGGATGAAAACAGAGATGGAAGCCCTGGGGCTCTGGCCAGTATCACGACCGGTTGTTTCCTCTGGTGCGGGAAGGCCCAGGGTGATTCTTGGTACCAGAGGGCAATATTACATCCTTTCCTCTCGACTGTGCTGTAAAGCATGCAAAAAATACTGGTTCTCTGATAAACCCCAGTGGCTAGACATGCTGCCAAAGCGGTTCTGTAACATCTTGCCAGCCTTCCTCACCCATAAGAAGGCCATCTGTAAAACAGTGATGGATGAACTGTGGCGCTCTGGTAAATCACCTAATGATATGGCCAACCAGCTGTCTGAGGTGCTTCACCTGAAGTACGAAAGAGCCCACCTAGCCTACCTGCTCAGCATGCAGAACATCAGGGATGCTGATGGACAGATGACCATCACTGGGGCACTGAGGAAGGATTACACACCAGCACTGTTTGGGGGTTATGAGGACACTGATGGGTGGCGTGGGGCGTCTGTGACTGCACACTATCTGGTGGAGTGCCTTCTTCAAGAATATCAGAGGCAGGAGGCAGCTCTCACTCAGGTCCTACAAGTCACTTTTGGACAGGTGTTCAGGTCTGATCACACACGCAAAGTTGCTAGAAAAGTGACGCTCACATCTGGCACAATGTCATCCTATGCTGTGATGAATGAGAACTGGATGATCCTGTCCTGGGTGATGCTGCAGTCTGAGAGTGAGCAGTCATTAGAGTCAATGTACTGTGGGCTGGCCAGTCGCTATAGTGCTGCTGCTATCCCCAAGGCCAAGTACCAGTGGGTGGACAGGGACTGCTTTGCTGCTTTCAGAGTCATGGACCCAGCACCTTATGAGCACCTGCAATGGGATGCCTGGAGGACCACTGAAGCTATCGTGGCAGAGGTTACTGCAGGGAACCTCAGGAATTTATGTGCCTCTTGCCTGAAGTATAATGAGGACATCATTGTAAAGCTGGACTTATTTCACTGCATGCGGCGGTTCACCAgggagtgtgtgtcagagcacCATCCTCTGTATAGCTCCTTCTGCCATTTTACCTTCTCTGTAGCGGATCAGAGTGACCTggagaaactgaaaaatgcaTACAGATTCTGTGGTATTGAGCCTGCTAATCCCCCCAAGCAGCATATCAGAGAGCACTGCAGGACAAAAGTTCCACATCCCAGAGAGCTGGTCCAGAGGGTGGAAGAGGTGCTTCAACATTTCCATCTAGCAAAGGATCCCAACAACATCCTCCTTTTTAAACCCTCAATGCTAAAGGTGTGGTGGATTCAGCGTGTACACATCCTTAGGGGCTGCCTGAGTGACCCTGAGGTGGAGGAAGGAATCCTCTACAGACATGGGGGGATGTTACAGCTCAATCATGTAAAGGGTGAAGGAGCTGCTGTGCCCATTTGGATCCCTGTCAGAGGCACCTCACAGCAGGAGGGGTTTCATTTCCACCAAGCTCAGTGGGTAACAGGTAATCGTGTCTCTCCTGAACTGTTCCAGGCACAGGGAATGACTGGGGTGGCACGCTGGAATTATCAGCGGCTGGTGGACCTGAAGCAGCCGGGGGTCGTCCTACCTGCAGTGTTTGACCCTGTGTTAATGATGGAGTTAAACAGGGCCTCTGTGAGAGTGACAGGGCAGCCCAAATATCCAGCCTTGCATACCTCCAGCAGGGACACAGGGGAGAAGTTTGGCCTACAGTATGTGGAGCCAGGCTGTCGACCAGTGCCTCTTGACAAACATAAGTGCAAGAAGTCCGCCCTAGGAGATGTGGAGATTGAAGAGGAGTCTTCATCTGGCTTTGAGAATGGTTAGATGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342784 lncRNA upstream 34143 3843115 ~ 3844679 (+) True G289378
TU342764 lncRNA upstream 139608 3710701 ~ 3739214 (+) True G289363
TU342751 lncRNA upstream 190906 3623064 ~ 3687916 (+) True G289351
TU342605 lncRNA upstream 384488 3493951 ~ 3494334 (+) True G289240
TU342523 lncRNA upstream 494940 3383677 ~ 3383882 (+) True G289164
TU342935 lncRNA downstream 56613 3942274 ~ 3974015 (+) True G289515
TU342939 lncRNA downstream 62535 3948196 ~ 3948458 (+) True G289517
TU342945 lncRNA downstream 99086 3984747 ~ 4350564 (+) True G289522
TU342978 lncRNA downstream 161548 4047209 ~ 4055985 (+) True G289533
TU342965 lncRNA downstream 168796 4054457 ~ 4069715 (+) False G289531
XM_026946915.2 mRNA upstream 70073 3781390 ~ 3808749 (+) True kita
XM_026946916.2 mRNA upstream 70073 3781390 ~ 3808749 (+) False kita
XM_026946917.2 mRNA upstream 70073 3781390 ~ 3808749 (+) False kita
XM_026946932.2 mRNA upstream 125391 3731642 ~ 3753431 (+) True pdgfra
XM_026946931.2 mRNA upstream 127728 3733913 ~ 3751094 (+) False pdgfra
XM_026946996.2 mRNA downstream 11354 3897015 ~ 3901866 (+) False mgst3a
XM_026946994.2 mRNA downstream 11364 3897025 ~ 3901866 (+) False mgst3a
XM_026946993.2 mRNA downstream 11366 3897027 ~ 3901866 (+) True mgst3a
XM_026946995.2 mRNA downstream 11377 3897038 ~ 3901866 (+) False mgst3a
XM_034313927.1 mRNA downstream 11421 3897082 ~ 3901866 (+) False mgst3a
XR_003404754.1 other upstream 511050 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 513420 3365278 ~ 3365402 (+) True LOC113546887
TU341918 other upstream 1382770 2489677 ~ 2496052 (+) True cnstb
XR_004580079.1 other upstream 1737185 2133158 ~ 2141637 (+) False LOC113546780
TU341376 other upstream 1870016 1996797 ~ 2008806 (+) False ptchd4
XR_004580118.1 other downstream 57834 3943495 ~ 3979785 (+) False ipo13
trnad-guc_14 other downstream 102391 3988052 ~ 3988123 (+) True trnad-guc_14
TU342966 other downstream 177974 4063635 ~ 4069715 (+) False G289531
trnad-guc_16 other downstream 441810 4327471 ~ 4327542 (+) True trnad-guc_16
trnad-guc_17 other downstream 443171 4328832 ~ 4328903 (+) False trnad-guc_17

Expression Profile