RNA id: XM_034313899.1


Basic Information

Item Value
RNA id XM_034313899.1
length 564
RNA type mRNA
GC content 0.60
exon number 1
gene id LOC117599796
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4641793 ~ 4642356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGGTCGCCATCCTGTGTGTTTGGGCTACATATTGCTCTGTTCTTGCTCCAGTCCGTGCGTCTACCCCCAAGTCTCCAGTCCTCGAATCTGCTCCCGAGCCTGCTCCAGTCCTCGAATCCGCTCCCGACCCCGCTCCAGTCCATGAGTCTGCTCCAGAGCCCATTCCAGCTCCTGAGGTGGCAGCTCCCGCTGCAGAACCTCCCAGGTTGTTGGCCTCTGCATCAGCTCCTGAGGTGGCAGCTCCCACTGCAGAACCTCTCAAATCAGCGGCGTCCATTCCAGCTCCTACCGAGGTGGCAGTTTCCACTGCAGAACCTCTCGAGTCGTCTGTGTCCGCTTCTGAACCCTCTGCCTGCCCTGTCTCGCCAAGGAGGCTGTCTCTGAGCTCTTCGCCTGCCCTGTCACGGCCAAGGAGGCCGTCCCCCAGCTCTTCGCCTGCCCTGTCCCGGCCAAGAAAGCCGTCTATGAACTCTTTGCCTGTTCTGTTACGGTCAAGGAGACCCACTGTGAACTCTCTGACTGTCCTGTCACGGCCATGGAGGCCGTCTGTGAACTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580080.1 lncRNA upstream 13956 4624142 ~ 4627837 (+) True LOC117599674
TU343408 lncRNA upstream 33043 4607368 ~ 4608750 (+) False LOC113545190
TU343392 lncRNA upstream 101953 4529928 ~ 4539840 (+) True G289866
TU343335 lncRNA upstream 207003 4433235 ~ 4434790 (+) True G289831
TU342943 lncRNA upstream 278705 4345579 ~ 4363088 (+) True G289521
XR_004580147.1 lncRNA downstream 62306 4704662 ~ 4798444 (+) False LOC113545162
TU343531 lncRNA downstream 88729 4731085 ~ 4731312 (+) True G289989
TU343537 lncRNA downstream 113150 4755506 ~ 4755735 (+) True G289995
XR_003404593.2 lncRNA downstream 142877 4785233 ~ 4798444 (+) True LOC113545162
TU343546 lncRNA downstream 160457 4802813 ~ 4803028 (+) True G290004
XM_026944392.2 mRNA upstream 32192 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA upstream 32192 4601055 ~ 4609601 (+) False LOC113545190
XM_026944629.2 mRNA upstream 60012 4561161 ~ 4581781 (+) True fam20b
XM_026944414.2 mRNA upstream 84306 4453316 ~ 4557487 (+) True ralgps2
XM_026944565.2 mRNA upstream 190871 4447647 ~ 4450922 (+) True LOC113545289
XM_026944657.2 mRNA downstream 174331 4816687 ~ 4822011 (+) True plpp6
XM_026944557.2 mRNA downstream 180682 4823038 ~ 4831944 (+) False LOC113545285
XM_026944556.2 mRNA downstream 180985 4823341 ~ 4831944 (+) True LOC113545285
XM_034313461.1 mRNA downstream 180985 4823341 ~ 4830815 (+) False LOC113545285
XM_026944559.2 mRNA downstream 180985 4823341 ~ 4830815 (+) False LOC113545285
trnad-guc_22 other upstream 291914 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 303819 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 308164 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 312890 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 314251 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 299595 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 299595 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 299595 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 299596 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1093117 5735473 ~ 5801693 (+) True usp24

Expression Profile