RNA id: XM_034313904.1


Basic Information

Item Value
RNA id XM_034313904.1
length 4361
RNA type mRNA
GC content 0.43
exon number 19
gene id LOC113545193
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5505839 ~ 5520633 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGTCATACCCGGGCGGGACTCGTCTAACAGGACCAAGTGCTTTTCAGTGATTTACTCGTGAATGGTCCATCCGCCTTCATTCCAACAACACAGTCGTATAGCTTGGGTCACAAACATTACTTTGGATTTGTTTTGCTTATACGTATGGTATCTCTTGTTGGATTGGATTAATTTACAGTGGGTAATTTGTTGGATTAACAATGAGAAGACAGAGTTGATGGTGCTGTTTCTTTGAAAAAGGATTACAAATTGGTACCACATACGATGGAACAGGGTGAAGACGTGAAAGTTAAGACCCTGAGGGAAAAATTCCAGAATGATGAATCTTTGAAGATCCGAATCAAACCTGCCATCCCAGAGAAACCCAAAACTATCCCCCCAGTATCTCCCAACACAAAAATCAGCAACCCCCTAATTGCATCAATCAATTCAGCTGTAGAGAACAGATTAGCCCCTCGTGTGGTCTTTAAAGATGACAAAAAGAACCACCAAGTTTCTCAACCTGAAAACTCAACAGTAAAGGCAAAGCCTATTTTGCTGGATAAGAACCAGAAGAAGGAAGCAGATCTTATCAAACAAGCCCTGAAAGATAAGAAGATTCAGCCCATGAGTCCTGTTATTCCGGTCTTAGAACAGACACCCAAAACTGAGTCTATCCAAAAGCCCCAAGTTTTGGAGAGACCAGCCAAAGTCTCTACACCATTCAAGAAGTCCGTATTCAACAAGACAGacaagaatgagaaagagaagacAAACCCCTCAGAATGGGATGTACCAGCTACCCCTGTCCTTGATCATTCAGATTCTACCATTTCCACTCCTGCCAAGGCTGAGGCCACAGTTAATAAGCCTTTGGTTCCCAAAGCTCTTGTTCCACCTGTTAGAGCGAACCCTGCTATCTCTGCTCCAGTTATTTCTCCTCCTGCAGTTGCAGTCTCAAAACCTCCTGCCCTGACAGTTCCAGAACCTGTTTCCCAAAATGGTCCTCAAATTGAGAACCCAAGGCCAGAAATTCCTATTAGACTTAATTCCAATGTAACAAGTCCAACAGCAGATATATTTTCAAATGGTTTACCAAAGGATCCAACCTCCATTCCAGAAATCTCTGATATTCTTGATATGGATATTCCACCTCCAATTATTCCCGAGGACTTTTCTGATGGTGGCACTTCTGTTCTAGATATATTTGCCAATGTTACTCCTGAGCATTCATTTCCTGGGgcttctctttctgtttctccagTGTCCAGCAGTCCAGCTCTATCTCGTACAGACACCCCTATTCCAGCAATAGAAACCCCAGATTCAAATGCTGCTTTTACATTCAGTCCTTCACCAACATGTTTAACTCCATCAACACATGTCAAGTCAATGGAAGAAAACAGGGTGACTGAATCCCACAAAGCAATTGACCACACAGAGAAGCCCTTGGAAGTTCCACTGTCCAGCTCACCCAAGCCCATTTCAGTGGTCTCTGCCCTTGCGAGAGCTGAAGAGATGACCCCTGTTAAGCATAACCATTGTGATCAACGACTGCTTACTCTTTTGGAAAAGGCTAAACGAAAGTCTACATCAGGCTCTCAGTCATCCACACCTGAAATTCTGCCTGTACTTGAGACAGATCTGCCTAGCAATGCTCCACTTGAGCCACCTGAGACAGCCCATGCTGAACCATTCTCACATGTGGAGGTCCCAAATGCCCCTGAAACTCTTGTGACTCTTCCTGATTTCCCCCCTGTTGACTATGAGAACAAGGCTGAAGAAGCACCAGCAAGAGAATATAACACCCAGCCCTATGAAACAGTCCTTAATAAGCAGGATCACAGGAAAAGTTCACCTGCTCCGAAAATGGTGATTGTGCAAAGACCTACTGTGCCTCCTCCACCTCCCCCTAGAAAGCCCCAGTCGACTGTGTCTAACGGTGGCCTCACACCAGAGAAACCACCTCAGTCCCCAAGCACAGATACGCAGTCCAGCATTCTGCCAAGTCAGCCCCTGGAGGACAATGGAATCATCTCAGCTCCTGCAGATTTTACTTCAGAGGATTCAGCATATGAAGATTCAGAAATTTGGGATCCATCTGAAACAGTTGGCTCACAAGCCGAAGCTCCAGATTATGGAAATCCTGGACCATCAGTTCATGAGGAAGCATTTTTGGAACACTTAAATCTAGAACATCAGATGCCAAATATGGACACTGCAGATGCTATGCTTCCCAGGACAGTGACACCTGAACATTCAGATTCAGGACCAGACTCTCTTTTCAATCTAACACTCCCATCTCCATCAGGAAAACAATTAAACTACAGCAGCACAGAGTTGGAAGACCTGGCGGCCAGCAAGAAAAGTAAAACGCAAAAGAAACAACGCAAAGGATCTCCTATGAATCCATATGCTGATACACCTGTTGTGaCAGAGGAGATCCCCAAGAAAGCACTGTTTTCCAAaaaGAACTCTGTGTCAGATGAAAAGGAGCTGaagtcaaaagaaaaacaaaggcagaaggacaaagagaaagaaaaggaaaaagaaaaagaaaagaaggagctgaaggaaaaggaaaagaaggagcagaaggaaaaagaaaaggagcagAAGGAtaagaaaaaagagcaaaaggagaaggaaaaagagaaagaaaagaaagaaaatgaaattaagaaaaaattcAAGATCACAGGAGAGGAGGAGGCCTTGTACCAAGCTAAAGTGACAGAGACCACTAAGGGGCGTAAAGATGATCTGGCAATAAAAGCTGGAGAGATCGTCAGCATTATTCGCACCACAGACTGCCCTAAAGGAAAATGGCTGGCCAGGGACAGTACAAACAAATATGGCTATATCCCGGTGGAGAGTGTGGAGTTGAATATTCAGGAGATGATTGTGCTGGGGAATAAAGCTAAAGCTACTAACAGGGCCAGCGTTAATGGGATCACCGACCCAGATTCCCCCAGTACGGACATAATATCCTCACCTCATTATAGCCTGAACCAAGAAAGCTTTGAAGATGACAGTGAGGAGtggggtgatgatgatgagtcaGTTTTCCCACCAGCTCACACCACAGATCTAGTACTGAACCAGAGGGTGGCTTCTCCAGACGCTGGTCCTGAGCCAGTTCCAGCTCTGCCAGCACATTCTGATAGAACTGATAATGTTCAAGCAGGACAAGAAGCGCTTCATAAACTGACGACCTTCTTTGCGCAGCCGAAAGTGCCCACACTGCAGAACAAAGCACCAAGCAAAGAACAAGAGCCACTTGCTGTCAGTGCTGAGGAACCAGTCAGTTcACTCAAACAGGAAATAGATCTGCAGCTCCTTCCTCCTCCGGATCTGTATGCTGACATCATCGTGGGGTGAACAGAACACATTTATTGCATTTGACATGTGATGGAAAGGGATTTTGAAAGACTGCAATGCATGCTTCGTTCTGTCTGATAGTGCATTGTGAAAGAACACGACTGCAACTCTTCCCCCCTGGCTTATGTGAAAGAATGCTGTCAGGCGTGTAGAAAAATGAGGCGTGGGTATGCATACGGTGTACACATGGTTCAAGGTGGCGTTCATTTAACTCCCATTTCACATGAGAAGGACTTTGAATGGAGGAATATACAGTAACTCGTTCACTGTGCAATGTTATTACTTTCCTTCTGGAACCTGGGTGTTTTTACTTCCACCATGCTATCCTGAGTAATCCGATGAAAGATTCCTTTAGATGATGTTAGTTGTAAAACAGCTGTGTAATACAAAGAGCTTGTAAGAAACAAAGCTAAACTGggaaaaaatcaaaagcaaCACGGAACCGATCATTTGGTTGAGGTTCCACTAACACTAAAAGATATTCTGTTTAAGACTTTTAAAATCATGTTGTGTAATTGTATTATTAGCTATTTTCACGTAACCATGAGCCTCAGTTTATATTAAAGTATTCTCAGCACACAGTCTTTACAAAACCTAATCACTCCTGAGAGAAAGATGGATTGATCCCTTTTGTACTTGATAGTATTACATCCATGTAgttatattattaaatgtgtgtgtggtgtatgtcTCACCTGCTTTAAACCACCTAAGTGTTTGGATAATGGTTactcgtttaaaaaaaaaggttaaacagTTTAGATTACACATAGAGGTATAGTTTTGCAAGTCCTACTTCTTCATGAATGAATGGACCTGGCACTCAGGtaatgataaaaacacaaaaatacatgaACCAATATGTTGTAATATGGTTTGATAATCCATCCTAGCATATCTtgcttatatttatttgtactgctaacatgaaattattttgcttttccAATAACCACAAGACAATATGCATTTATATGCTcaatacacattttcttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404604.2 lncRNA upstream 198937 5302630 ~ 5306902 (+) True LOC113545370
TU343799 lncRNA upstream 252116 5253517 ~ 5253723 (+) True G290192
XR_004580165.1 lncRNA upstream 354914 5147185 ~ 5150925 (+) True LOC117599804
TU343587 lncRNA upstream 598027 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 605491 4898967 ~ 4900348 (+) True G290030
TU344029 lncRNA downstream 23485 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 59185 5579818 ~ 5588495 (+) True LOC117599803
TU344031 lncRNA downstream 126744 5647377 ~ 5655687 (+) True G290419
TU344180 lncRNA downstream 212098 5732731 ~ 5734300 (+) True G290562
TU344187 lncRNA downstream 281165 5801798 ~ 5804340 (+) True G290566
XM_034313588.1 mRNA upstream 3435 5327165 ~ 5502404 (+) False dab1a
XM_034313587.1 mRNA upstream 3435 5327165 ~ 5502404 (+) False dab1a
XM_026944630.2 mRNA upstream 3435 5342327 ~ 5502404 (+) True dab1a
XM_026944633.2 mRNA upstream 3435 5342327 ~ 5502404 (+) False dab1a
XM_034313586.1 mRNA upstream 3435 5342327 ~ 5502404 (+) False dab1a
XM_026944339.1 mRNA downstream 22323 5542956 ~ 5575570 (+) True plpp3
XM_026944340.1 mRNA downstream 22323 5542956 ~ 5574980 (+) False plpp3
XM_026944585.2 mRNA downstream 214841 5735474 ~ 5801693 (+) False usp24
XM_026944586.2 mRNA downstream 214841 5735474 ~ 5801693 (+) False usp24
XM_034313451.1 mRNA downstream 323400 5844033 ~ 5856556 (+) False dhcr24
XR_004580098.1 other upstream 526439 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 526439 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 526984 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 531778 4941951 ~ 4974061 (+) False dnm3a
trnad-guc_22 other upstream 1155960 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580141.1 other downstream 214840 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 1492109 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2068735 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2362585 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2364012 7884645 ~ 7884716 (+) True trnaa-cgc_6

Expression Profile