RNA id: XR_004580147.1


Basic Information

Item Value
RNA id XR_004580147.1
length 469
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC113545162
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4704662 ~ 4798444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGACCTTGACAGATGCTATCTGAGGAGCTGCAGCACAGGGATGTTGTGTACTTGAGAAGATGTGATACTTGGTCAGATGATAGGAGATCCTGAGGAAGTGGATGAAGACCGGATGAAACACTCACCCAATTAAAACGTCGAATTATTTTCAAGACCATCTCAGAAAAGACTCATACCAAAACTATGAACAGaACCAAAAGCCATAAATTGGGAATGCTGGATGGAAAAACCATATGGCTAATGAAATGAAACTCCTAGCGACAAGCAGATGTAGTGATTTGTTACAGTAATTTTAGTAGCATTCAGATTCATGAGCTTAAAGACCTGTGGCATATGGGGAATGCTTATAACCCACATATAACTAAGGCTTGTAGCTTTCCCAGGCTCTTTATCAGCTGGATTGGCCCATTCTCTGTGTCAGGCCAAATAGAAGGCATGCAATGAAGTTACATAAACTCTTTGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580080.1 lncRNA upstream 76825 4624142 ~ 4627837 (+) True LOC117599674
TU343408 lncRNA upstream 95912 4607368 ~ 4608750 (+) False LOC113545190
TU343392 lncRNA upstream 164822 4529928 ~ 4539840 (+) True G289866
TU343335 lncRNA upstream 269872 4433235 ~ 4434790 (+) True G289831
TU342943 lncRNA upstream 341574 4345579 ~ 4363088 (+) True G289521
TU343546 lncRNA downstream 4369 4802813 ~ 4803028 (+) True G290004
TU343547 lncRNA downstream 6116 4804560 ~ 4806580 (+) True G290005
TU343551 lncRNA downstream 10096 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA downstream 13725 4812169 ~ 4814796 (+) True G290009
TU343583 lncRNA downstream 97678 4896122 ~ 4896387 (+) True G290028
XM_034313899.1 mRNA upstream 62306 4641793 ~ 4642356 (+) True LOC117599796
XM_026944392.2 mRNA upstream 95061 4601055 ~ 4609601 (+) True LOC113545190
XM_034313854.1 mRNA upstream 95061 4601055 ~ 4609601 (+) False LOC113545190
XM_026944629.2 mRNA upstream 122881 4561161 ~ 4581781 (+) True fam20b
XM_026944414.2 mRNA upstream 147175 4453316 ~ 4557487 (+) True ralgps2
XM_026944657.2 mRNA downstream 18243 4816687 ~ 4822011 (+) True plpp6
XM_026944557.2 mRNA downstream 24594 4823038 ~ 4831944 (+) False LOC113545285
XM_026944556.2 mRNA downstream 24897 4823341 ~ 4831944 (+) True LOC113545285
XM_034313461.1 mRNA downstream 24897 4823341 ~ 4830815 (+) False LOC113545285
XM_026944559.2 mRNA downstream 24897 4823341 ~ 4830815 (+) False LOC113545285
trnad-guc_22 other upstream 354783 4349808 ~ 4349879 (+) True trnad-guc_22
trnad-guc_19 other upstream 366688 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 371033 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 375759 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 377120 4327471 ~ 4327542 (+) True trnad-guc_16
XR_004580098.1 other downstream 143507 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 143507 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 143507 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 143508 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 937029 5735473 ~ 5801693 (+) True usp24

Expression Profile