Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580107.1 |
| length | 352 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC117599731 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 6930369 ~ 6933860 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU344782 | lncRNA | upstream | 95680 | 6834407 ~ 6834698 (+) | True | G291037 |
| TU344666 | lncRNA | upstream | 202864 | 6713927 ~ 6727514 (+) | True | G290935 |
| TU344600 | lncRNA | upstream | 507412 | 6422672 ~ 6422966 (+) | True | G290879 |
| TU344584 | lncRNA | upstream | 587838 | 6342263 ~ 6342540 (+) | True | G290863 |
| TU344375 | lncRNA | upstream | 692462 | 6237714 ~ 6237916 (+) | True | G290699 |
| TU344819 | lncRNA | downstream | 5331 | 6939191 ~ 6939619 (+) | True | G291058 |
| TU344857 | lncRNA | downstream | 48103 | 6981963 ~ 6982804 (+) | True | G291096 |
| TU344873 | lncRNA | downstream | 124523 | 7058383 ~ 7058583 (+) | True | G291109 |
| TU345070 | lncRNA | downstream | 286446 | 7220306 ~ 7227227 (+) | True | G291274 |
| TU345097 | lncRNA | downstream | 327190 | 7261050 ~ 7262111 (+) | True | G291300 |
| XM_026944596.2 | mRNA | upstream | 19190 | 6905521 ~ 6911188 (+) | False | fam167ab |
| XM_026944595.2 | mRNA | upstream | 19190 | 6905526 ~ 6911188 (+) | True | fam167ab |
| XM_026944472.2 | mRNA | upstream | 37025 | 6884303 ~ 6893353 (+) | True | eif5 |
| XM_026944427.2 | mRNA | upstream | 62347 | 6850356 ~ 6868031 (+) | True | LOC113545215 |
| XM_026944567.2 | mRNA | upstream | 81845 | 6833386 ~ 6848533 (+) | True | tnfaip2a |
| XM_026944554.2 | mRNA | downstream | 53249 | 6987109 ~ 7003630 (+) | True | mtmr9 |
| XM_034313789.1 | mRNA | downstream | 53263 | 6987123 ~ 7003630 (+) | False | mtmr9 |
| XM_026944555.2 | mRNA | downstream | 55142 | 6989002 ~ 7003630 (+) | False | mtmr9 |
| XM_034313790.1 | mRNA | downstream | 55174 | 6989034 ~ 7003630 (+) | False | mtmr9 |
| XM_026944691.2 | mRNA | downstream | 78882 | 7012742 ~ 7019686 (+) | True | tdh |
| XR_004580141.1 | other | upstream | 1128685 | 5735473 ~ 5801693 (+) | True | usp24 |
| XR_004580098.1 | other | upstream | 1950978 | 4941951 ~ 4979400 (+) | False | dnm3a |
| XR_004580167.1 | other | downstream | 78882 | 7012742 ~ 7019686 (+) | False | tdh |
| trnac-gca_25 | other | downstream | 655508 | 7589368 ~ 7589439 (+) | True | trnac-gca_25 |
| trnaa-cgc_5 | other | downstream | 949358 | 7883218 ~ 7883289 (+) | True | trnaa-cgc_5 |
| trnaa-cgc_6 | other | downstream | 950785 | 7884645 ~ 7884716 (+) | True | trnaa-cgc_6 |
| trnaa-ugc_17 | other | downstream | 953668 | 7887528 ~ 7887599 (+) | True | trnaa-ugc_17 |
