RNA id: XR_004580108.1


Basic Information

Item Value
RNA id XR_004580108.1
length 344
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC117599731
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6930369 ~ 6933860 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGAGGGCAGGAAAGTTTACAGCTACAGGATGGATAGTGgacatgttccagtatgactGGAATTTTACACTAACTGGCCTAAAATGAAACCCTAGTGCAGATACAAAACAAGAGTTAAAGAGTATGTGAGATTAAAGGAGCAGATCCTTCAGATGGCTGCCTTGCTCTGAGAGCCACGACATGGAGTCCTGCAGTCCACATTCTGTGGTAGCACCTTTAGAATTCGTCTATGGCACAACTGTACAGGTTGAAACTGAACCTGGCGCAATGAGCCACTACTTGGCAATGCTTCGAAGGAACCCAGTTAAAGAGTGAAACACTGCACTCAGGAAAGCTAACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344782 lncRNA upstream 95677 6834407 ~ 6834698 (+) True G291037
TU344666 lncRNA upstream 202861 6713927 ~ 6727514 (+) True G290935
TU344600 lncRNA upstream 507409 6422672 ~ 6422966 (+) True G290879
TU344584 lncRNA upstream 587835 6342263 ~ 6342540 (+) True G290863
TU344375 lncRNA upstream 692459 6237714 ~ 6237916 (+) True G290699
TU344819 lncRNA downstream 5331 6939191 ~ 6939619 (+) True G291058
TU344857 lncRNA downstream 48103 6981963 ~ 6982804 (+) True G291096
TU344873 lncRNA downstream 124523 7058383 ~ 7058583 (+) True G291109
TU345070 lncRNA downstream 286446 7220306 ~ 7227227 (+) True G291274
TU345097 lncRNA downstream 327190 7261050 ~ 7262111 (+) True G291300
XM_026944596.2 mRNA upstream 19187 6905521 ~ 6911188 (+) False fam167ab
XM_026944595.2 mRNA upstream 19187 6905526 ~ 6911188 (+) True fam167ab
XM_026944472.2 mRNA upstream 37022 6884303 ~ 6893353 (+) True eif5
XM_026944427.2 mRNA upstream 62344 6850356 ~ 6868031 (+) True LOC113545215
XM_026944567.2 mRNA upstream 81842 6833386 ~ 6848533 (+) True tnfaip2a
XM_026944554.2 mRNA downstream 53249 6987109 ~ 7003630 (+) True mtmr9
XM_034313789.1 mRNA downstream 53263 6987123 ~ 7003630 (+) False mtmr9
XM_026944555.2 mRNA downstream 55142 6989002 ~ 7003630 (+) False mtmr9
XM_034313790.1 mRNA downstream 55174 6989034 ~ 7003630 (+) False mtmr9
XM_026944691.2 mRNA downstream 78882 7012742 ~ 7019686 (+) True tdh
XR_004580141.1 other upstream 1128682 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 1950975 4941951 ~ 4979400 (+) False dnm3a
XR_004580167.1 other downstream 78882 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 655508 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 949358 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 950785 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 953668 7887528 ~ 7887599 (+) True trnaa-ugc_17

Expression Profile