RNA id: XR_004580121.1


Basic Information

Item Value
RNA id XR_004580121.1
length 1805
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC117599748
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7945952 ~ 7948031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaactataatggAGTATTTGTTACAGTACCAAGTTCAGTTCCTCATTATTATGTTTGATATTTGACGTTGTGACtgctattttcttttctcttccaaatccttttgttttttcttaagCATGTCAGTGTCTAAAGATTCTTTGTTATACATGAGCCATAGCCCGTATTATGTAGGCTGCCTTTTAATGCTGATCTCCCATTTCTCAGTTCTTCATCTGGAAGACATGCAACCACTGACAAATCTGTCAGTGTGTAACGTGAGACCCTCACAGACCCTCAGGTGCGCAcgtgcgtgagtgtgtgcgtgtgagagggCAGCAGATGGCGAGCACTCATTTCTGCTTGTGATATCACCGTCAGCTCGCATCATTCTTCCATACATCATTCCCATTCTATTATCAGGGTGTACACCTGagactgatgagaaaaagaGCTCATCTCATGAAAATACACCTGTATGCAGCATTATGATGGTGTAAACCTTTTTACGTGGCAGATTTCCTCACAGTGCAGGTGCTTATGGAGTAGATGCAGTCAATCCGCCTGCCTCCAACCATGAGGCTGCTGGGTTCTTCAAAGACTGGATTAAACAGCACAGCATGGTCTGCTCCATTTCCCCTCCATCTGACTGACTCAAGACCAGGCTCTGGTTTCTACCCATAATTCCCATGCAACACTCTAAGCAAGGTCATCTCAGTGACTTCACCAACTTTTAGTCATCTGGCTTGGATCAGGGGATTCCTACTAATTAATAGGCCTAATTGATTTACTTGGTTGTGTCATTTCAGTGTCAGAATGTAGTTGAGTATATGACCCAGTTTGCTTTTTAGATAtacataatgtatattttttcacaAGGAAAATCTTATCTtttgttttggaaatgtttatCATGACAAAAGGCCATTTTGATTATACCAATAGCATcagcgatgatgatgatgatgatgatgatgatgatgatggagcaAATCTCCCCACAGATTGTGCCTCATaagttttttttagtaaagttgtgtctAAATGTttgccaaactgaactaaacatttccactagatttaaaaaaatttgagaAATGCTGATTTAGGTCGTACTcttgcatgtgtatgttgatTACCCGTAATGTGCAAAGGATGTTCTTGAGACAGCTTGTTTGCATTTAATGATACccacaaaacataaaagcaCACAGAGGGCTGGAAACATGAAATAACCACTAATTggtgaaagaaaaggcagaaagtAGAAATGCCAGTTACTGCTATGCCAAAAATTATTTAGCAGTGTGACAGCATCTGAAAAGGTCAACCTCTAGAGACAAATTAGTGAAAAGTTGACTTAGGTGTGAATTAAgcgaggtgaaaagaaaatggtttgacatgaaaacagagaaaaaaaaagatctacactgtaccctggtgatcatggacaccaagaatgtcacacagagaaactgctatttttaaatgtgttttggcCAATGTGCTAGATCTGAAGTGTTGCATAGCATTCAAAGAATTCAAATGGAACTGATTTATAGCTTTCATCCTCTTAAAAAAGTCACttaaaaaagcatttgtttATGGCTTATGGCTATGCGCAGACAGACCAGCCCATCCTCTGTTTATGATTGGTTTTATGTTgactctttttctttattttccattttctttaattaatgctaataatataaaatgcctGGGTGTCACAACATTTTCTCAAAgctattcttagtccctgacatAGTGAATtagcatgaggatgtttttttgaTAAAGACTATGAAGCACTTCTTTAAGTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345543 lncRNA upstream 108872 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 108872 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 163944 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 278147 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 279943 7665129 ~ 7666009 (+) True G291581
TU345697 lncRNA downstream 177990 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 361211 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 516806 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 522916 8470947 ~ 8473728 (+) True G291976
XR_004580077.1 lncRNA downstream 540938 8488969 ~ 8534500 (+) True LOC113545369
XM_026944508.2 mRNA upstream 140 7885793 ~ 7945812 (+) True brf1b
XM_026944507.2 mRNA upstream 140 7885793 ~ 7945812 (+) False brf1b
XM_026944452.2 mRNA upstream 113926 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944614.2 mRNA downstream 95355 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 140656 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 140656 8088687 ~ 8125663 (+) False jag2b
XM_026944387.2 mRNA downstream 225131 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 225131 8173162 ~ 8190581 (+) False esr2a
trnaa-cgc_7 other upstream 57116 7888765 ~ 7888836 (+) True trnaa-cgc_7
trnaa-ugc_18 other upstream 57872 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 58353 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 61236 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-cgc_5 other upstream 62663 7883218 ~ 7883289 (+) True trnaa-cgc_5
TU345691 other downstream 95368 8043399 ~ 8074437 (+) False nudt14
TU345969 other downstream 540616 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 943637 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 1045482 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 1125997 9074028 ~ 9160901 (+) False LOC113545247

Expression Profile