RNA id: XR_004580130.1


Basic Information

Item Value
RNA id XR_004580130.1
length 1912
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC117599767
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 388695 ~ 391202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atGTATGCGTGTTCAATTTTTCTGGATTGAggttgaatatttatttactatgtTGAGTGGATCTAAAAAACTTACCTAATAATATTAGAAGATTTAGCACAAAAATGTGACTCTTATCCATATcttttttatcaaaataaaatagaacatCTCTTTTCCTTAATGTAAATGGGCAGAAAGGAAGCCCAGTATCTCCCACTTCAAAGTTGACTTGAGGATTTATTTTGAAACTCTTCAAGGTCTTTCAAATCAGAAAGCAACCAGAACTATGGATACGCTCGAAACGGTGGAAATCACCCCGCCCACCAGAGCAACTGTTGCGTAGCAGCCAGCCACTCATATTTACGCACGCCGTGCCGTGGAGGTGAAATTCAAACTGCTGTTTTGCTACATGCTGAATTGCTGTCTCGCTGTATTGGTTTTTGTCTTCTGGAATTTTACTACATCAAGCATGTTTTAACAAAACTTGAAATTGTTATGAagcagcaaagaaaccttgtaagAATGGTTCAGGATCTGAAAGAAAATGTCAGGGAGATCACTGAGGCTAACCACTTAACTCCAAAACGTTTTCCAGTTGAAGATTTAAGATCATTAACTTCCCTGGAAAGTGATCTTCGATCCTGTCCGGAAACGAGACGAGAAGTGGTAGGTAACACTAACGGTTATGCGCAGTTCCCTAATGCCTTCCGTTATCACTTACAGATCTGTTTCTAATTACTGTTCTAATTAAATTGGGTGTGATCAATCTAAAGCAAACTGATCTAAAGAGTAAAGACTAAAAGCGTGCTGCATCACAGTGTGGTTCAGCAGCTGCacagaagagaataaaaaagacCTGCAGCGGGTGGTAAGGGTGGCAGAGCGCATCACTGGCACAACACTACCTTCCCTCAAAGACATTTACACTGGCCATCTCGGGAAGAAACCAGTTGTATCATAATGGACCCCACTCACCCTGGACATCACCGGTTTTCCCCTCTGCCCTCTGGGAAAAGCGACAGAACAATCAAAACGAGGACTAACAGATTAAagaacagtttcttcccacagGCAGTCAAATGCACAAATCctcctccttccctccttctgCTCCCAAGCATTATCCAACAATAAACCAATGTCTCAGGTCTACGAGtgcagtaatacacacacacacacacacacacacacactgcatatttGCACTAAAGTACTGGAACTTGGATTGCTGGGTGGCGTGGATCTGAAGAACACTGTCTGGAGAATAATGAAGCAGGCAATTAAAAATGACTTTGCTAAAACCATCAGCTGGAGAggtgtaaatggaaaaacaccATTCCAAAGTTTGGAGCTTAAGTGTTGTGATTGAGGCTGTAAGAAGAAATCCAGTTTGTGCCCAAATGACTGAGCTGGAGGTTGGGCAAGTTATTAGAAGGTGGTTTTATTTGGCTGGGGATCGTGAGGGTggcagaaaaagaagaacaccACTGCAAAATGTTCCTGTAAATAACTAATTTTCTGTTATTGTGTAATTTATGCTTTTGCACAcgtgtaaaaatatatatttgtttttctaaccattttttgtttgttggtttcaCTTGATTTATgcacatttactttaatttgcATTATTGCTTTgctgtttaacatttatattttattgctaAGATTTTAATTACTGTTATACTTCTATTATATTGTGactgttgcttttattttgtcttGATCTACGGCTGTCTTGATCaacttgtttacattttttcacatctgtaaatatatttaatttgtcttttatAACCagcttttgtttgttggtttcaCTTACTTTATTTGCGCACATTTAGTTGTTTATGTGCATTATTGGTTTACTTAACATTTCTACTTCCTGCTTAGTTTTTAATCTCTGTTATTCTTGTAACCATGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580132.1 lncRNA upstream 233102 155007 ~ 155595 (+) True LOC117599768
XR_004580136.1 lncRNA upstream 234134 154129 ~ 154563 (+) True LOC117599770
TU340466 lncRNA upstream 300806 25194 ~ 87891 (+) False G287513
XR_004580133.1 lncRNA downstream 63396 454598 ~ 468404 (+) True LOC113525268
TU340609 lncRNA downstream 371229 762431 ~ 802524 (+) True G287627
TU340626 lncRNA downstream 410421 801623 ~ 893504 (+) True G287630
XR_004580134.1 lncRNA downstream 535031 926233 ~ 926639 (+) True LOC117599769
TU340884 lncRNA downstream 599008 990210 ~ 990435 (+) True G287814
XM_034313883.1 mRNA upstream 178513 203020 ~ 210184 (+) True LOC117599788
XM_026910051.2 mRNA upstream 254433 120176 ~ 134264 (+) True LOC113523954
XM_034313880.1 mRNA upstream 286718 85203 ~ 101979 (+) True LOC117599786
XM_034313772.1 mRNA downstream 13950 405152 ~ 405946 (+) True LOC117599754
XM_034313888.1 mRNA downstream 119854 511056 ~ 517444 (+) True LOC117599791
XM_034313779.1 mRNA downstream 415119 806321 ~ 806730 (+) True LOC117599762
XM_034313775.1 mRNA downstream 416025 807227 ~ 807704 (+) False LOC117599757
XM_034313774.1 mRNA downstream 421058 812260 ~ 812802 (+) True LOC117599756
TU340599 other downstream 415104 806306 ~ 897362 (+) False G287625
TU340601 other downstream 415104 806306 ~ 819547 (+) True G287625
TU340603 other downstream 415104 806306 ~ 831980 (+) False G287625
TU340640 other downstream 415991 807193 ~ 898410 (+) False LOC117599757
TU340641 other downstream 415991 807193 ~ 821061 (+) True LOC117599757

Expression Profile