Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580150.1 |
| length | 227 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 4 |
| gene id | LOC117599781 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 2147215 ~ 2151238 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU341394 | lncRNA | upstream | 73334 | 2027343 ~ 2073881 (+) | False | G288225 |
| TU341415 | lncRNA | upstream | 75939 | 2071034 ~ 2071276 (+) | True | G288242 |
| TU341398 | lncRNA | upstream | 118509 | 2026869 ~ 2028706 (+) | True | G288225 |
| TU341372 | lncRNA | upstream | 151536 | 1995460 ~ 1995679 (+) | True | G288207 |
| TU341357 | lncRNA | upstream | 212432 | 1934577 ~ 1934783 (+) | True | G288192 |
| TU341667 | lncRNA | downstream | 64339 | 2215577 ~ 2218638 (+) | True | G288461 |
| TU341720 | lncRNA | downstream | 174420 | 2325658 ~ 2326289 (+) | True | G288512 |
| TU341802 | lncRNA | downstream | 297184 | 2448422 ~ 2453374 (+) | True | G288581 |
| TU341932 | lncRNA | downstream | 355331 | 2506569 ~ 2515375 (+) | True | G288694 |
| TU341934 | lncRNA | downstream | 355331 | 2506569 ~ 2510414 (+) | False | G288694 |
| XM_026946812.2 | mRNA | upstream | 5034 | 2133158 ~ 2142181 (+) | True | LOC113546780 |
| XM_034313448.1 | mRNA | upstream | 15944 | 2122561 ~ 2131271 (+) | True | LOC117599673 |
| XM_034313449.1 | mRNA | upstream | 15944 | 2124988 ~ 2131271 (+) | False | LOC117599673 |
| XM_026946948.2 | mRNA | upstream | 27298 | 2092475 ~ 2119917 (+) | True | tnfrsf21 |
| XM_026946831.2 | mRNA | upstream | 125952 | 1996120 ~ 2021263 (+) | True | ptchd4 |
| XM_026946939.2 | mRNA | downstream | 11193 | 2162431 ~ 2181156 (+) | True | pla2g7 |
| XM_026946983.2 | mRNA | downstream | 38521 | 2189759 ~ 2212201 (+) | True | tdrd6 |
| XM_026946863.2 | mRNA | downstream | 184832 | 2336070 ~ 2354598 (+) | False | fzd3a |
| XM_026946862.2 | mRNA | downstream | 184833 | 2336071 ~ 2354598 (+) | True | fzd3a |
| XM_026947002.2 | mRNA | downstream | 285460 | 2436698 ~ 2439040 (+) | True | lft1 |
| XR_004580079.1 | other | upstream | 5578 | 2133158 ~ 2141637 (+) | False | LOC113546780 |
| TU341376 | other | upstream | 138409 | 1996797 ~ 2008806 (+) | False | ptchd4 |
| TU341023 | other | upstream | 787853 | 1358186 ~ 1359362 (+) | False | srp9 |
| XR_004580082.1 | other | upstream | 882583 | 1259176 ~ 1264632 (+) | False | LOC117599677 |
| TU340986 | other | upstream | 903543 | 1243057 ~ 1243672 (+) | True | G287892 |
| TU341918 | other | downstream | 338439 | 2489677 ~ 2496052 (+) | True | cnstb |
| XR_003404755.1 | other | downstream | 1214040 | 3365278 ~ 3365402 (+) | True | LOC113546887 |
| XR_003404754.1 | other | downstream | 1216410 | 3367648 ~ 3367772 (+) | True | LOC113546886 |
| XR_004580118.1 | other | downstream | 1792257 | 3943495 ~ 3979785 (+) | False | ipo13 |
| trnad-guc_14 | other | downstream | 1836814 | 3988052 ~ 3988123 (+) | True | trnad-guc_14 |
