RNA id: XR_004580164.1


Basic Information

Item Value
RNA id XR_004580164.1
length 468
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC117599803
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5579818 ~ 5588495 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTAGCTGTTGTTCCATGTTATTTGTATCATGTTATTGTCTTGCCTTGTTCATTTATAACTGTCATAGACACATTTGCTACAGATATGAAACTGCAAACTCTGCGAACACTGTCTGTATCTGCAATGGTCATTACTGAAGCATAGTCCAGGGGTCTTTGTGCTTCTGAATCTCCTGTTCCCTTTCTACCAATTTACTGCCATATGTGATTCATGTGAAAAGGGATAATGAATAAGAGAGAAGGTCATGGTGGAGAGTTCAACCGACtacaaaaaGTACCAGATGATGCTGTTTCCAGTACCTCAAAAGCCCACCTTCCCAGCTAATAAAGCATGTCCCCAAATATTAATGGATGTCCAATTTTGGTCTGCAGAATTCTTTTAGACAGAAATATTGTAAAGAAGTCCTGCTAACTTTATCAGGGTTAAGTATAGGTCCTACATATGCTTCAAAAGGATGAGAATGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404604.2 lncRNA upstream 272916 5302630 ~ 5306902 (+) True LOC113545370
TU343799 lncRNA upstream 326095 5253517 ~ 5253723 (+) True G290192
XR_004580165.1 lncRNA upstream 428893 5147185 ~ 5150925 (+) True LOC117599804
TU343587 lncRNA upstream 672006 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 679470 4898967 ~ 4900348 (+) True G290030
TU344031 lncRNA downstream 58882 5647377 ~ 5655687 (+) True G290419
TU344180 lncRNA downstream 144236 5732731 ~ 5734300 (+) True G290562
TU344187 lncRNA downstream 213303 5801798 ~ 5804340 (+) True G290566
TU344188 lncRNA downstream 216181 5804676 ~ 5805588 (+) True G290567
TU344190 lncRNA downstream 218511 5807006 ~ 5807916 (+) True G290569
XM_026944339.1 mRNA upstream 4248 5542956 ~ 5575570 (+) True plpp3
XM_026944340.1 mRNA upstream 4838 5542956 ~ 5574980 (+) False plpp3
XM_034313904.1 mRNA upstream 59185 5505839 ~ 5520633 (+) True LOC113545193
XM_026944642.2 mRNA upstream 77414 5342327 ~ 5502404 (+) False dab1a
XM_026944585.2 mRNA downstream 146979 5735474 ~ 5801693 (+) False usp24
XM_026944586.2 mRNA downstream 146979 5735474 ~ 5801693 (+) False usp24
XM_034313451.1 mRNA downstream 255538 5844033 ~ 5856556 (+) False dhcr24
XM_026944360.2 mRNA downstream 255538 5844033 ~ 5856556 (+) True dhcr24
XM_026944357.2 mRNA downstream 255539 5844034 ~ 5856556 (+) False dhcr24
XR_004580098.1 other upstream 600418 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 600418 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 600963 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 605757 4941951 ~ 4974061 (+) False dnm3a
trnad-guc_22 other upstream 1229939 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580141.1 other downstream 146978 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 1424247 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2000873 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2294723 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2296150 7884645 ~ 7884716 (+) True trnaa-cgc_6

Expression Profile