RNA id: XR_004580165.1


Basic Information

Item Value
RNA id XR_004580165.1
length 585
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC117599804
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5147185 ~ 5150925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGTGTGCTGTTGAGTCAGCCAGCCTGCTCACGctgaagagaggagagaggattGCTATCTGCTGCCGGGATACCTGTATCCACAGAGCCACAGATCAAGGGACATACACACTTCTTTTGACATTTGGGGGTCCTCATGAACAACAGACTGCTTCATTTATCCAGAAGAAAGTAGGCAAAACCGACAGGAAACATACATCAGGTGTATGCAAAGGAAAAGGATTCTGCGAGAGGAAGACTGGGTGTCCGGCAACAGCCTCAGATTGATATAGCTGAGCATACAGATCCTGTCCACATCGTCAAGGTAACTGGACTTCACCATAGCAACTCACCGACTCACCTGTCATTAAGGCCAGACTGTGATGCACGATGGATAGGAATGAGAGCgtgagggagaaagaggaaagCCACATTTCTTCATCAGTGATCTGCTCTGACAGTCTCTCAAGGCTTGCACTAATGAAGTCACATTTGTCTCAGGCAGGCCCAGATTCCATTAGCCCATGTGTAATTGTGTTAACTCTTGACACGGCCTTAAATGGAGTAtggttgttgtgtgtgtatttgtgtgtgctttttagATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343587 lncRNA upstream 239373 4898967 ~ 4907812 (+) False G290030
TU343586 lncRNA upstream 246837 4898967 ~ 4900348 (+) True G290030
TU343583 lncRNA upstream 250798 4896122 ~ 4896387 (+) True G290028
TU343551 lncRNA upstream 332389 4808540 ~ 4814796 (+) False G290009
TU343552 lncRNA upstream 332389 4812169 ~ 4814796 (+) True G290009
TU343799 lncRNA downstream 102592 5253517 ~ 5253723 (+) True G290192
XR_003404604.2 lncRNA downstream 151705 5302630 ~ 5306902 (+) True LOC113545370
TU344029 lncRNA downstream 393193 5544118 ~ 5599007 (+) True G290417
XR_004580164.1 lncRNA downstream 428893 5579818 ~ 5588495 (+) True LOC117599803
TU344031 lncRNA downstream 496452 5647377 ~ 5655687 (+) True G290419
XM_034313881.1 mRNA upstream 49708 5079221 ~ 5097477 (+) True oma1
XM_026944478.2 mRNA upstream 69267 5066310 ~ 5077918 (+) True mysm1
XM_026944660.2 mRNA upstream 83036 5052030 ~ 5064149 (+) True scrn2
XM_034313406.1 mRNA upstream 98743 4998148 ~ 5048442 (+) True suco
XM_034313407.1 mRNA upstream 98743 4998148 ~ 5048442 (+) False suco
XM_034313588.1 mRNA downstream 176240 5327165 ~ 5502404 (+) False dab1a
XM_034313587.1 mRNA downstream 176240 5327165 ~ 5502404 (+) False dab1a
XM_026944630.2 mRNA downstream 191402 5342327 ~ 5502404 (+) True dab1a
XM_026944633.2 mRNA downstream 191402 5342327 ~ 5502404 (+) False dab1a
XM_034313586.1 mRNA downstream 191402 5342327 ~ 5502404 (+) False dab1a
XR_004580098.1 other upstream 167785 4941951 ~ 4979400 (+) False dnm3a
XR_004580099.1 other upstream 167785 4941952 ~ 4979400 (+) False dnm3a
XR_004580101.1 other upstream 168330 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other upstream 173124 4941951 ~ 4974061 (+) False dnm3a
trnad-guc_22 other upstream 797306 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580141.1 other downstream 584548 5735473 ~ 5801693 (+) True usp24
XR_004580167.1 other downstream 1861817 7012742 ~ 7019686 (+) False tdh
trnac-gca_25 other downstream 2438443 7589368 ~ 7589439 (+) True trnac-gca_25
trnaa-cgc_5 other downstream 2732293 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 2733720 7884645 ~ 7884716 (+) True trnaa-cgc_6

Expression Profile