RNA id: trnaa-cgc_7


Basic Information

Item Value
RNA id trnaa-cgc_7
length 72
RNA type tRNA
GC content 0.56
exon number 1
gene id trnaa-cgc_7
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7888765 ~ 7888836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTCGCATGTATGAGGTCCAGGGTTCAATCCCCTGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345543 lncRNA upstream 51685 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 51685 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 106757 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 220960 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 222756 7665129 ~ 7666009 (+) True G291581
XR_004580121.1 lncRNA downstream 57116 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 237185 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 420406 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 576001 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 582111 8470947 ~ 8473728 (+) True G291976
XM_026944452.2 mRNA upstream 56739 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944614.2 mRNA downstream 154550 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 199851 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 199851 8088687 ~ 8125663 (+) False jag2b
XM_026944387.2 mRNA downstream 284326 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 284326 8173162 ~ 8190581 (+) False esr2a
trnaa-ugc_18 other upstream 685 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-ugc_17 other upstream 1166 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 4049 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-cgc_5 other upstream 5476 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnac-gca_25 other upstream 299326 7589368 ~ 7589439 (+) True trnac-gca_25
TU345691 other downstream 154563 8043399 ~ 8074437 (+) False nudt14
TU345969 other downstream 599811 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 1002832 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 1104677 8993513 ~ 8996996 (+) True G292216
XR_004580138.1 other downstream 1185192 9074028 ~ 9160901 (+) False LOC113545247