RNA id: trnaa-ugc_17


Basic Information

Item Value
RNA id trnaa-ugc_17
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaa-ugc_17
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7887528 ~ 7887599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGTCCAGGGTTCAATCCCCTGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345543 lncRNA upstream 50448 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 50448 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 105520 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 219723 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 221519 7665129 ~ 7666009 (+) True G291581
XR_004580121.1 lncRNA downstream 58353 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 238422 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 421643 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 577238 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 583348 8470947 ~ 8473728 (+) True G291976
XM_026944452.2 mRNA upstream 55502 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944614.2 mRNA downstream 155787 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 201088 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 201088 8088687 ~ 8125663 (+) False jag2b
XM_026944387.2 mRNA downstream 285563 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 285563 8173162 ~ 8190581 (+) False esr2a
trnaa-cgc_6 other upstream 2812 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-cgc_5 other upstream 4239 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnac-gca_25 other upstream 298089 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 867842 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 2085835 5735473 ~ 5801693 (+) True usp24
trnaa-ugc_18 other downstream 410 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-cgc_7 other downstream 1166 7888765 ~ 7888836 (+) True trnaa-cgc_7
TU345691 other downstream 155800 8043399 ~ 8074437 (+) False nudt14
TU345969 other downstream 601048 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 1004069 8891668 ~ 8891740 (+) True trnak-uuu_18