RNA id: trnaa-ugc_18


Basic Information

Item Value
RNA id trnaa-ugc_18
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaa-ugc_18
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7888009 ~ 7888080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGTCCAGGGTTCAATCCCCTGCATCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345543 lncRNA upstream 50929 7833330 ~ 7837080 (+) False G291644
TU345545 lncRNA upstream 50929 7833330 ~ 7837080 (+) True G291644
TU345535 lncRNA upstream 106001 7777629 ~ 7782008 (+) False atp5mpl
TU345444 lncRNA upstream 220204 7666919 ~ 7667805 (+) True G291582
TU345443 lncRNA upstream 222000 7665129 ~ 7666009 (+) True G291581
XR_004580121.1 lncRNA downstream 57872 7945952 ~ 7948031 (+) True LOC117599748
TU345697 lncRNA downstream 237941 8126021 ~ 8127898 (+) True G291769
TU345853 lncRNA downstream 421162 8309242 ~ 8321459 (+) True G291907
TU345951 lncRNA downstream 576757 8464837 ~ 8465037 (+) True G291972
TU345955 lncRNA downstream 582867 8470947 ~ 8473728 (+) True G291976
XM_026944452.2 mRNA upstream 55983 7785422 ~ 7832026 (+) True ppp1r13bb
XM_026944614.2 mRNA downstream 155306 8043386 ~ 8074444 (+) True nudt14
XM_026944501.2 mRNA downstream 200607 8088687 ~ 8125663 (+) True jag2b
XM_026944502.2 mRNA downstream 200607 8088687 ~ 8125663 (+) False jag2b
XM_026944387.2 mRNA downstream 285082 8173162 ~ 8190581 (+) False esr2a
XM_026944385.2 mRNA downstream 285082 8173162 ~ 8190581 (+) False esr2a
trnaa-ugc_17 other upstream 410 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-cgc_6 other upstream 3293 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-cgc_5 other upstream 4720 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnac-gca_25 other upstream 298570 7589368 ~ 7589439 (+) True trnac-gca_25
XR_004580167.1 other upstream 868323 7012742 ~ 7019686 (+) False tdh
trnaa-cgc_7 other downstream 685 7888765 ~ 7888836 (+) True trnaa-cgc_7
TU345691 other downstream 155319 8043399 ~ 8074437 (+) False nudt14
TU345969 other downstream 600567 8488647 ~ 8509483 (+) False LOC113545369
trnak-uuu_18 other downstream 1003588 8891668 ~ 8891740 (+) True trnak-uuu_18
TU346212 other downstream 1105433 8993513 ~ 8996996 (+) True G292216