RNA id: trnac-gca_25


Basic Information

Item Value
RNA id trnac-gca_25
length 72
RNA type tRNA
GC content 0.57
exon number 1
gene id trnac-gca_25
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7589368 ~ 7589439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345246 lncRNA upstream 67245 7521924 ~ 7522123 (+) True G291434
TU345235 lncRNA upstream 68510 7489308 ~ 7520858 (+) True G291423
TU345188 lncRNA upstream 184263 7404428 ~ 7405105 (+) True G291380
TU345097 lncRNA upstream 327257 7261050 ~ 7262111 (+) True G291300
TU345070 lncRNA upstream 362141 7220306 ~ 7227227 (+) True G291274
XR_003404600.2 lncRNA downstream 21048 7610487 ~ 7614980 (+) True LOC113545343
TU345443 lncRNA downstream 75690 7665129 ~ 7666009 (+) True G291581
TU345444 lncRNA downstream 77480 7666919 ~ 7667805 (+) True G291582
TU345535 lncRNA downstream 188190 7777629 ~ 7782008 (+) False atp5mpl
TU345543 lncRNA downstream 243891 7833330 ~ 7837080 (+) False G291644
XM_026944338.2 mRNA upstream 86930 7478282 ~ 7502438 (+) True rhoj
XM_026944424.2 mRNA upstream 232454 7348155 ~ 7356914 (+) True chrna2b
XM_026944605.2 mRNA upstream 244453 7339079 ~ 7344915 (+) True si:ch211-142k18.1
XM_034313432.1 mRNA upstream 313222 7263926 ~ 7276146 (+) False nme6
XM_034313431.1 mRNA upstream 313222 7267406 ~ 7276146 (+) True nme6
XM_026944346.2 mRNA downstream 33782 7623221 ~ 7629922 (+) False six4b
XM_026944345.2 mRNA downstream 33783 7623222 ~ 7629922 (+) True six4b
XM_026944579.2 mRNA downstream 46746 7636185 ~ 7639104 (+) True six1b
XM_026944474.2 mRNA downstream 134867 7724306 ~ 7767694 (+) True rtn1b
XM_026944475.2 mRNA downstream 167457 7756896 ~ 7766704 (+) False rtn1b
XR_004580167.1 other upstream 569682 7012742 ~ 7019686 (+) False tdh
XR_004580141.1 other upstream 1787675 5735473 ~ 5801693 (+) True usp24
XR_004580098.1 other upstream 2609968 4941951 ~ 4979400 (+) False dnm3a
trnaa-cgc_5 other downstream 293779 7883218 ~ 7883289 (+) True trnaa-cgc_5
trnaa-cgc_6 other downstream 295206 7884645 ~ 7884716 (+) True trnaa-cgc_6
trnaa-ugc_17 other downstream 298089 7887528 ~ 7887599 (+) True trnaa-ugc_17
trnaa-ugc_18 other downstream 298570 7888009 ~ 7888080 (+) True trnaa-ugc_18
trnaa-cgc_7 other downstream 299326 7888765 ~ 7888836 (+) True trnaa-cgc_7

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnac-gca-163 True 72 mRNA 0.57 1 NC_048593.1 32246090 ~ 32246161 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_1412 True 72 tRNA 0.57 1 NC_053133.1 10232486 ~ 10232557 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_1412 True 72 tRNA 0.60 1 NC_056707.1 5439021 ~ 5439092 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_2532 True 72 tRNA 0.57 1 NC_056719.1 12185530 ~ 12185601 (-)
mexican tetra (Astyanax mexicanus) trnac-gca_39 True 72 tRNA 0.57 1 NW_019172608.1 231198 ~ 231269 (+)