RNA id: trnad-guc_16


Basic Information

Item Value
RNA id trnad-guc_16
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnad-guc_16
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4327471 ~ 4327542 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343070 lncRNA upstream 47975 4248599 ~ 4279496 (+) False clocka
XR_004580146.1 lncRNA upstream 83520 4239026 ~ 4243951 (+) True LOC117599777
TU342961 lncRNA upstream 253505 4061818 ~ 4073966 (+) True G289530
TU342957 lncRNA upstream 253505 4062764 ~ 4073966 (+) False G289530
TU342967 lncRNA upstream 257104 4054457 ~ 4070367 (+) True G289531
TU343090 lncRNA downstream 1306 4328848 ~ 4338299 (+) True trnad-guc_17
TU342943 lncRNA downstream 18037 4345579 ~ 4363088 (+) True G289521
XR_004580081.1 lncRNA downstream 23206 4350748 ~ 4352801 (+) True LOC117599675
TU343335 lncRNA downstream 105693 4433235 ~ 4434790 (+) True G289831
TU343392 lncRNA downstream 202386 4529928 ~ 4539840 (+) True G289866
XM_034313929.1 mRNA upstream 17542 4248330 ~ 4309929 (+) True clocka
XM_034313932.1 mRNA upstream 17542 4248330 ~ 4309929 (+) False clocka
XM_034313930.1 mRNA upstream 17542 4248330 ~ 4309929 (+) False clocka
XM_034313931.1 mRNA upstream 17542 4248330 ~ 4309929 (+) False clocka
XM_034313840.1 mRNA upstream 88550 4235827 ~ 4238921 (+) True nmu
XM_026944622.2 mRNA downstream 39223 4366765 ~ 4396120 (+) True LOC113545323
XM_034313494.1 mRNA downstream 80226 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA downstream 80226 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA downstream 80226 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA downstream 81223 4408765 ~ 4419833 (+) True LOC113545214
TU342966 other upstream 257756 4063635 ~ 4069715 (+) False G289531
trnad-guc_14 other upstream 339348 3988052 ~ 3988123 (+) True trnad-guc_14
XR_004580118.1 other upstream 347686 3943495 ~ 3979785 (+) False ipo13
XR_003404754.1 other upstream 959699 3367648 ~ 3367772 (+) True LOC113546886
XR_003404755.1 other upstream 962069 3365278 ~ 3365402 (+) True LOC113546887
trnad-guc_17 other downstream 1290 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_18 other downstream 6016 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_19 other downstream 10361 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_22 other downstream 22266 4349808 ~ 4349879 (+) True trnad-guc_22
XR_004580098.1 other downstream 614409 4941951 ~ 4979400 (+) False dnm3a