RNA id: trnad-guc_22


Basic Information

Item Value
RNA id trnad-guc_22
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnad-guc_22
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4349808 ~ 4349879 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343090 lncRNA upstream 11509 4328848 ~ 4338299 (+) True trnad-guc_17
TU343078 lncRNA upstream 14849 4265383 ~ 4334959 (+) True G289615
TU343083 lncRNA upstream 19536 4319461 ~ 4330272 (+) True G289619
TU343070 lncRNA upstream 70312 4248599 ~ 4279496 (+) False clocka
XR_004580146.1 lncRNA upstream 105857 4239026 ~ 4243951 (+) True LOC117599777
XR_004580081.1 lncRNA downstream 869 4350748 ~ 4352801 (+) True LOC117599675
TU343335 lncRNA downstream 83356 4433235 ~ 4434790 (+) True G289831
TU343392 lncRNA downstream 180049 4529928 ~ 4539840 (+) True G289866
TU343408 lncRNA downstream 257489 4607368 ~ 4608750 (+) False LOC113545190
XR_004580080.1 lncRNA downstream 274263 4624142 ~ 4627837 (+) True LOC117599674
XM_034313929.1 mRNA upstream 39879 4248330 ~ 4309929 (+) True clocka
XM_034313932.1 mRNA upstream 39879 4248330 ~ 4309929 (+) False clocka
XM_034313930.1 mRNA upstream 39879 4248330 ~ 4309929 (+) False clocka
XM_034313931.1 mRNA upstream 39879 4248330 ~ 4309929 (+) False clocka
XM_034313840.1 mRNA upstream 110887 4235827 ~ 4238921 (+) True nmu
XM_026944622.2 mRNA downstream 16886 4366765 ~ 4396120 (+) True LOC113545323
XM_034313494.1 mRNA downstream 57889 4407768 ~ 4419833 (+) False LOC113545214
XM_026944426.2 mRNA downstream 57889 4407768 ~ 4419833 (+) False LOC113545214
XM_034313496.1 mRNA downstream 57889 4407768 ~ 4419833 (+) False LOC113545214
XM_034313495.1 mRNA downstream 58886 4408765 ~ 4419833 (+) True LOC113545214
trnad-guc_19 other upstream 11834 4337903 ~ 4337974 (+) True trnad-guc_19
trnad-guc_18 other upstream 16179 4333558 ~ 4333629 (+) True trnad-guc_18
trnad-guc_17 other upstream 20905 4328832 ~ 4328903 (+) False trnad-guc_17
trnad-guc_16 other upstream 22266 4327471 ~ 4327542 (+) True trnad-guc_16
TU342966 other upstream 280093 4063635 ~ 4069715 (+) False G289531
XR_004580098.1 other downstream 592072 4941951 ~ 4979400 (+) False dnm3a
XR_004580101.1 other downstream 592072 4941951 ~ 4978855 (+) False dnm3a
XR_004580100.1 other downstream 592072 4941951 ~ 4974061 (+) False dnm3a
XR_004580099.1 other downstream 592073 4941952 ~ 4979400 (+) False dnm3a
XR_004580141.1 other downstream 1385594 5735473 ~ 5801693 (+) True usp24