RNA id: trnar-acg_18


Basic Information

Item Value
RNA id trnar-acg_18
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnar-acg_18
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20364686 ~ 20364758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCCAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353863 lncRNA downstream 116771 20247235 ~ 20247915 (-) True G298758
TU353862 lncRNA downstream 118284 20243428 ~ 20246402 (-) True G298757
TU353857 lncRNA downstream 127452 20236928 ~ 20237234 (-) True G298752
XR_004580091.1 lncRNA downstream 174042 20190083 ~ 20190644 (-) True LOC117599709
XR_004580094.1 lncRNA downstream 181112 20183058 ~ 20183574 (-) True LOC117599712
TU353886 lncRNA upstream 527 20365285 ~ 20365496 (-) True trnah-gug_23
TU353904 lncRNA upstream 24326 20389084 ~ 20389700 (-) False G298794
TU353905 lncRNA upstream 25376 20390134 ~ 20390717 (-) True G298794
TU353913 lncRNA upstream 64756 20429514 ~ 20430208 (-) True G298801
TU353941 lncRNA upstream 127251 20492009 ~ 20501140 (-) True G298823
XM_034313541.1 mRNA downstream 60939 20293412 ~ 20303747 (-) True gtf2a1
XM_026911127.2 mRNA downstream 84841 20276967 ~ 20279845 (-) True nfkbiaa
XM_026909974.2 mRNA downstream 215213 20147871 ~ 20149473 (-) True LOC113523908
XM_034313569.1 mRNA downstream 257441 20105758 ~ 20107245 (-) True LOC117599697
XM_034313602.1 mRNA downstream 433433 19924626 ~ 19931253 (-) True LOC117599719
XM_026911126.2 mRNA upstream 27882 20392640 ~ 20403559 (-) True LOC113524770
XM_026911108.2 mRNA upstream 60527 20425285 ~ 20437474 (-) False LOC113524747
XM_026911106.2 mRNA upstream 60527 20425285 ~ 20437474 (-) False LOC113524747
XM_026911107.2 mRNA upstream 60527 20425285 ~ 20437474 (-) True LOC113524747
XM_034313575.1 mRNA upstream 74862 20439620 ~ 20442292 (-) True LOC117599698
trnae-uuc_12 other downstream 160 20364455 ~ 20364526 (-) True trnae-uuc_12
trnah-gug_22 other downstream 6359 20358256 ~ 20358327 (-) True trnah-gug_22
trnar-acg_17 other downstream 9788 20354826 ~ 20354898 (-) True trnar-acg_17
trnae-uuc_11 other downstream 10018 20354597 ~ 20354668 (-) True trnae-uuc_11
trnah-gug_21 other downstream 10703 20353912 ~ 20353983 (-) True trnah-gug_21
trnah-gug_23 other upstream 722 20365480 ~ 20365551 (-) False trnah-gug_23
trnah-gug_24 other upstream 5450 20370208 ~ 20370279 (-) True trnah-gug_24
trnae-uuc_13 other upstream 13547 20378305 ~ 20378376 (-) True trnae-uuc_13
trnah-gug_25 other upstream 14076 20378834 ~ 20378905 (-) True trnah-gug_25
trnae-uuc_14 other upstream 54532 20419290 ~ 20419361 (-) True trnae-uuc_14

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000120_01081730_01089632.mRNA True 1112 mRNA 0.46 8 CI01000120 1081710 ~ 1089632 (-)