RNA id: trnas-gcu_20


Basic Information

Item Value
RNA id trnas-gcu_20
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-gcu_20
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14397851 ~ 14397932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU350207 lncRNA upstream 15099 14382546 ~ 14382752 (+) True trnas-gcu_11
TU350095 lncRNA upstream 93160 14302661 ~ 14304691 (+) False arid1b
TU350097 lncRNA upstream 94272 14302661 ~ 14303579 (+) False arid1b
TU350096 lncRNA upstream 94272 14302802 ~ 14303579 (+) False arid1b
TU350104 lncRNA upstream 137861 14259536 ~ 14259990 (+) True G295597
TU350290 lncRNA downstream 158797 14556729 ~ 14574795 (+) True G295766
TU350316 lncRNA downstream 229170 14627102 ~ 14631160 (+) True G295787
TU350355 lncRNA downstream 266161 14664093 ~ 14664381 (+) True G295818
TU350359 lncRNA downstream 267600 14665532 ~ 14665767 (+) True G295822
TU350399 lncRNA downstream 320353 14718285 ~ 14719968 (+) True G295852
XM_026923391.2 mRNA upstream 21443 14367708 ~ 14376408 (+) True ak7a
XM_026923393.2 mRNA upstream 21771 14367708 ~ 14376080 (+) False ak7a
XM_026923305.2 mRNA upstream 30572 14357280 ~ 14367279 (+) True galca
XM_026923482.2 mRNA upstream 55139 14311226 ~ 14342712 (+) False zdhhc14
XM_026922943.2 mRNA downstream 5685 14403617 ~ 14421827 (+) False papola
XM_034313726.1 mRNA downstream 8638 14406570 ~ 14423172 (+) True papola
XM_026923152.2 mRNA downstream 199259 14597191 ~ 14620898 (+) True reps1
XM_026923153.2 mRNA downstream 199259 14597191 ~ 14620898 (+) False reps1
XM_026922601.2 mRNA downstream 247701 14645633 ~ 14659946 (+) True scara3
trnas-gcu_19 other upstream 625 14397145 ~ 14397226 (+) True trnas-gcu_19
trnas-gcu_16 other upstream 10294 14387476 ~ 14387557 (+) True trnas-gcu_16
trnas-gcu_14 other upstream 12346 14385424 ~ 14385505 (+) True trnas-gcu_14
trnas-gcu_13 other upstream 13464 14384306 ~ 14384387 (+) True trnas-gcu_13
trnas-gcu_11 other upstream 15232 14382538 ~ 14382619 (+) False trnas-gcu_11
trnas-gcu_21 other downstream 1366 14399298 ~ 14399379 (+) True trnas-gcu_21
trnas-gcu_22 other downstream 3462 14401394 ~ 14401475 (+) True trnas-gcu_22
TU350716 other downstream 825714 15223646 ~ 15305400 (+) True G296138
trnaa-cgc_8 other downstream 938252 15336184 ~ 15336256 (+) True trnaa-cgc_8
trnad-guc_27 other downstream 1368788 15766720 ~ 15766791 (+) True trnad-guc_27