RNA id: LOC117599550


Basic Information

Item Value
RNA id LOC117599550
length 557
RNA type V_segment
GC content 0.49
exon number 2
gene id LOC117599550
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4399281 ~ 4399935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGgatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGTGTGTATAATGGTAACTACCTAGCCTGGTACCtgcagaaacctggagaagttcctaaactcctgatctaCAGTGCTACTAGCTTACAGTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGACTTCACTCTAACCATCAGTGGAGCCCAGACTGAAGATTCAGGAaattactactgtcagagtttaCATGTGATCAGTAGTAGCTGggtgttcacacagtgttagagcGTGGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggaggatgtgatacagcacaatgacacacactgtggacgagagaaaacacaccacactaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327859 lncRNA downstream 64737 4333555 ~ 4334544 (-) False LOC113523868
TU327824 lncRNA downstream 76600 4278059 ~ 4322681 (-) False G276515
TU327822 lncRNA downstream 76600 4320491 ~ 4322681 (-) True G276515
TU327849 lncRNA downstream 90244 4308588 ~ 4309037 (-) True G276538
TU327765 lncRNA downstream 143337 4255200 ~ 4255944 (-) True G276497
TU327870 lncRNA upstream 188 4400123 ~ 4415116 (-) True G276556
TU327871 lncRNA upstream 14524 4414459 ~ 4557257 (-) True G276557
TU327796 lncRNA upstream 29563 4429498 ~ 4482994 (-) False G276503
TU327891 lncRNA upstream 49947 4449882 ~ 4502862 (-) True G276570
TU327896 lncRNA upstream 66338 4466273 ~ 4482565 (-) False LOC117599578
XM_026909919.2 mRNA downstream 55736 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 55736 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 338767 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 453980 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 492628 3857515 ~ 3906653 (-) True kmt2e
XM_026912198.2 mRNA upstream 384193 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 497335 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 525781 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 554356 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 554356 4954291 ~ 4965093 (-) True slc25a3a
LOC117599554 other downstream 12177 4386342 ~ 4387104 (-) True LOC117599554
LOC117599551 other downstream 37339 4361332 ~ 4361942 (-) True LOC117599551
TU327840 other downstream 98757 4297860 ~ 4300524 (-) True G276530
TU327682 other downstream 307418 4082278 ~ 4091863 (-) True G276421
TU327549 other downstream 662204 3736130 ~ 3737077 (-) True G276340
LOC117599559 other upstream 3576 4403511 ~ 4404115 (-) True LOC117599559
LOC117599560 other upstream 24259 4424194 ~ 4424693 (-) True LOC117599560
LOC117599558 other upstream 29119 4429054 ~ 4429953 (-) True LOC117599558
LOC117599553 other upstream 39301 4439236 ~ 4439760 (-) True LOC117599553
LOC117599556 other upstream 49086 4449021 ~ 4449660 (-) True LOC117599556

Expression Profile