RNA id: LOC117599553


Basic Information

Item Value
RNA id LOC117599553
length 435
RNA type V_segment
GC content 0.47
exon number 2
gene id LOC117599553
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4439236 ~ 4439760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGGatccagaggtcaggtgactgtgactcaGACTCCTTCAGTGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTAGCAGGGTGAATAGTGGTAATCAACTAGCCTGGTACCtgcagaaacctggagaagttcctaaactcctgatctaCAGTGCTACTAGCTTATACTCAGGGACTCCAGCTCGTTTCAGAGGCAGTGGATCTAATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattactactgtcagagttaccATTATATCAGTAGTAGCTAtgtgttcacacagtgttagagcGTGGTACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU327783 lncRNA downstream 14694 4358625 ~ 4424542 (-) True G276503
TU327870 lncRNA downstream 24120 4400123 ~ 4415116 (-) True G276556
TU327859 lncRNA downstream 104692 4333555 ~ 4334544 (-) False LOC113523868
TU327824 lncRNA downstream 116555 4278059 ~ 4322681 (-) False G276515
TU327891 lncRNA upstream 10122 4449882 ~ 4502862 (-) True G276570
TU327896 lncRNA upstream 26513 4466273 ~ 4482565 (-) False LOC117599578
TU328119 lncRNA upstream 358899 4798659 ~ 4799157 (-) True G276749
TU328127 lncRNA upstream 362147 4801907 ~ 4844371 (-) True G276755
TU328136 lncRNA upstream 377348 4817108 ~ 4841754 (-) False G276761
XM_026909919.2 mRNA downstream 95691 4331260 ~ 4343545 (-) False LOC113523868
XM_034312956.1 mRNA downstream 95691 4331260 ~ 4343545 (-) True LOC113523868
XM_026909970.2 mRNA downstream 378722 4044706 ~ 4060514 (-) True cd36
XM_034313185.1 mRNA downstream 493935 3919302 ~ 3945301 (-) True kdm7aa
XM_034313181.1 mRNA downstream 532583 3857515 ~ 3906653 (-) True kmt2e
XM_026912198.2 mRNA upstream 344368 4784128 ~ 4792797 (-) True psmc2
XM_026922701.2 mRNA upstream 457510 4897270 ~ 4917780 (-) True gys2
XM_026922781.2 mRNA upstream 485956 4925716 ~ 4938813 (-) True ldhba
XM_034313267.1 mRNA upstream 514531 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA upstream 514531 4954291 ~ 4965093 (-) True slc25a3a
LOC117599558 other downstream 9283 4429054 ~ 4429953 (-) True LOC117599558
LOC117599560 other downstream 14543 4424194 ~ 4424693 (-) True LOC117599560
LOC117599559 other downstream 35121 4403511 ~ 4404115 (-) True LOC117599559
LOC117599550 other downstream 39301 4399281 ~ 4399935 (-) True LOC117599550
LOC117599554 other downstream 52132 4386342 ~ 4387104 (-) True LOC117599554
LOC117599556 other upstream 9261 4449021 ~ 4449660 (-) True LOC117599556
LOC117599557 other upstream 16547 4456307 ~ 4457044 (-) True LOC117599557
LOC117599578 other upstream 26301 4466061 ~ 4467626 (-) True LOC117599578
LOC117599583 other upstream 37927 4477687 ~ 4478367 (-) True LOC117599583
TU327795 other upstream 38007 4477767 ~ 4587096 (-) False G276503

Expression Profile