RNA id: TU325852


Basic Information

Item Value
RNA id TU325852
length 573
RNA type TUCP
GC content 0.41
exon number 2
gene id G274979
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 144583 ~ 146040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTTATGTTACGTGTGTTTATAGTACATGTGTTTACAATCTGTTTGTTTATGGTACGTGTGTTTACGGTACGTGTGTTTATGGTACGTGTGTTTAtgctgtgtgtgtttacggtaCATGTGTTTACGGTACGTGtgtttatgctgtgtgtgtttacggtaCATGTGTTTACGGTACATGTGTTTATGGTACGTGtgtttatgctgtgtgtgttcacggtatGTGTGTTTACGGTACATGTGTTTATGGTACGTGtgtttatgctgtgtgtgttcacggtacATGTGTTTACGGTACATGTGTTTATGGTACGTGtgtttatgctgtgtgtgtttacggtaCATGTGTTTACGGTACGTGtgtttatgctgtgtgtgtttacggtaCGTGTGTTTACGGTACATGTGTTTACGTTACGTGTGTTTATGGTACGTGtgtttatgctgtgtgtgtttacggtaCGTGTGTTTACGGTACGTGTGTTTATGGTACGTGtgtttatgctgtgtgtgtttacggtaCATGTGTTTATGGTACGTGTGTTTACGGTACGTGTGTTTATGCTGTGTGT

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0001944 vasculature development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325837 lncRNA downstream 61335 82623 ~ 83248 (-) True G274968
TU325769 lncRNA downstream 110886 31803 ~ 33697 (-) True G274918
TU325856 lncRNA upstream 22564 168604 ~ 174698 (-) True G274982
TU325915 lncRNA upstream 101283 247323 ~ 280961 (-) True G275028
TU325917 lncRNA upstream 104631 250671 ~ 285231 (-) True G275029
TU325909 lncRNA upstream 139775 285815 ~ 287024 (-) False LOC113535352
TU325911 lncRNA upstream 145610 291650 ~ 292596 (-) True G275024
XM_026928570.2 mRNA downstream 36746 89473 ~ 107837 (-) True zdhhc17
XM_034313235.1 mRNA downstream 94546 14021 ~ 50037 (-) False osbpl8
XM_034313037.1 mRNA upstream 102296 248336 ~ 253845 (-) True LOC117599453
XM_034313069.1 mRNA upstream 135394 281434 ~ 287052 (-) True LOC113535352
XM_034312957.1 mRNA upstream 208934 354974 ~ 369037 (-) True LOC113531599
XM_034312958.1 mRNA upstream 230417 376457 ~ 394253 (-) True LOC117599422
XM_034313101.1 mRNA upstream 257921 403961 ~ 557687 (-) False LOC113531866
TU325907 other upstream 105585 251625 ~ 253817 (-) False LOC117599453
TU325948 other upstream 219049 365089 ~ 369034 (-) False LOC113531599
TU326084 other upstream 390406 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 437158 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 451374 597414 ~ 601029 (-) True LOC117599533

Expression Profile