RNA id: TU325907


Basic Information

Item Value
RNA id TU325907
length 437
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC117599453
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 248336 ~ 253845 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCACGCTTCACACTCCTCAGGCTAATGTGATGAAGTGAATCTCCGATAGCGCTTCATGGCAATTTCACACTTTAATCCGGATCAATTACAGAAcccagatttatttctttataaactaatccggatttaatattttctctgtctgtaCTATGTTTAAGAGGATGGCTGAATTTGGTCCGGATTCTGGAGGCCGTGTAAAGGGCGTGACTATCGTGAAGCCCATCGTGTTCGGTAACGTCGCTCGATATTTCGGTAAGAAGCGAGAAGAAGACGGACACACGCATCAGTGGACCGTTTACGTTAAACCTTACAGAAATGAGGACATGTCCGCTTACGTCAAGAAGATCCAGTTCAAGCTACACGAGAGTTACGGAAATCCTTTACGAGTGGTGACGAAGCCTCCGTATGAGATCACAGAAACCGGAtggggagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325856 lncRNA downstream 76927 168604 ~ 174698 (-) True G274982
TU325837 lncRNA downstream 168377 82623 ~ 83248 (-) True G274968
TU325769 lncRNA downstream 217928 31803 ~ 33697 (-) True G274918
TU325909 lncRNA upstream 31998 285815 ~ 287024 (-) False LOC113535352
TU325911 lncRNA upstream 37833 291650 ~ 292596 (-) True G275024
TU325941 lncRNA upstream 93397 347214 ~ 347449 (-) True G275049
TU325947 lncRNA upstream 108532 362349 ~ 365024 (-) False LOC113531599
TU326060 lncRNA upstream 129108 382925 ~ 679665 (-) True G275134
XM_026928102.2 mRNA downstream 86884 131691 ~ 164741 (-) False cmah
XM_026928101.2 mRNA downstream 92343 131691 ~ 159282 (-) True cmah
XM_034313090.1 mRNA downstream 92343 134189 ~ 159282 (-) False cmah
XM_026928103.2 mRNA downstream 92744 131691 ~ 158881 (-) False cmah
XM_034313091.1 mRNA downstream 93276 131691 ~ 158349 (-) False cmah
XM_034313069.1 mRNA upstream 27617 281434 ~ 287052 (-) True LOC113535352
XM_034312957.1 mRNA upstream 101157 354974 ~ 369037 (-) True LOC113531599
XM_034312958.1 mRNA upstream 122640 376457 ~ 394253 (-) True LOC117599422
XM_034313101.1 mRNA upstream 150144 403961 ~ 557687 (-) False LOC113531866
XM_034313105.1 mRNA upstream 150144 403961 ~ 511761 (-) False LOC113531866
TU325852 other downstream 105585 144583 ~ 146040 (-) True G274979
TU325948 other upstream 111272 365089 ~ 369034 (-) False LOC113531599
TU326084 other upstream 282629 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 329381 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 343597 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 355186 609003 ~ 611951 (-) False LOC117599466

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006682 True 3265 mRNA 0.43 6 CM030134.1 14302226 ~ 14308572 (+)