RNA id: TU325917


Basic Information

Item Value
RNA id TU325917
length 331
lncRNA type read_through
GC content 0.45
exon number 2
gene id G275029
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 250671 ~ 285231 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTacgttattttatttatttacgtatCATTTTATTGCGTAACAGAAGTAGCGCTAGTGGAGAAATCACGCAACAgattcatgtttgtgtttcattGACTTGGAAAATCCTTTAACGTAACCTGCACCGCAGAGCGTAACTGTACAGCACGGTGCATAAGTATGTGCCCCCCGTctacatgatgctgccaccaccgtgcttcactgtaaACCTGCTGGAGAAACAACGTACAACTTCTAGCATTCGGGacgtacctgtgtgtgtgtgtgtgtgtgtgtgtgtattggggtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325856 lncRNA downstream 75973 168604 ~ 174698 (-) True G274982
TU325837 lncRNA downstream 167423 82623 ~ 83248 (-) True G274968
TU325769 lncRNA downstream 216974 31803 ~ 33697 (-) True G274918
TU325909 lncRNA upstream 584 285815 ~ 287024 (-) False LOC113535352
TU325911 lncRNA upstream 6419 291650 ~ 292596 (-) True G275024
TU325941 lncRNA upstream 61983 347214 ~ 347449 (-) True G275049
TU325947 lncRNA upstream 77118 362349 ~ 365024 (-) False LOC113531599
TU326060 lncRNA upstream 97694 382925 ~ 679665 (-) True G275134
XM_026928102.2 mRNA downstream 85930 131691 ~ 164741 (-) False cmah
XM_026928101.2 mRNA downstream 91389 131691 ~ 159282 (-) True cmah
XM_034313090.1 mRNA downstream 91389 134189 ~ 159282 (-) False cmah
XM_026928103.2 mRNA downstream 91790 131691 ~ 158881 (-) False cmah
XM_034313091.1 mRNA downstream 92322 131691 ~ 158349 (-) False cmah
XM_034312957.1 mRNA upstream 69743 354974 ~ 369037 (-) True LOC113531599
XM_034312958.1 mRNA upstream 91226 376457 ~ 394253 (-) True LOC117599422
XM_034313101.1 mRNA upstream 118730 403961 ~ 557687 (-) False LOC113531866
XM_034313105.1 mRNA upstream 118730 403961 ~ 511761 (-) False LOC113531866
XM_034313103.1 mRNA upstream 118730 403961 ~ 511745 (-) False LOC113531866
TU325852 other downstream 104631 144583 ~ 146040 (-) True G274979
TU325948 other upstream 79858 365089 ~ 369034 (-) False LOC113531599
TU326084 other upstream 251215 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 297967 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 312183 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 323772 609003 ~ 611951 (-) False LOC117599466

Expression Profile