RNA id: TU326041


Basic Information

Item Value
RNA id TU326041
length 1109
lncRNA type read_through
GC content 0.36
exon number 2
gene id G275126
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 487792 ~ 488922 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcagggatctagtggagtccatgcctcgacgggtcagggctgtttcggcagcaaaagggggaccaacacaataataggcaggtggtcataatgctatggctgatcggtgtacacaGTTCAGTACTTCTTATTTATCTGAATTTCTCCTTTTATAAATGACCCTActtgcttttatttaataacttGCAGTTTTTTTGGTGATAATTTGACTTTTTTCTATTATTGTTTGCATTTCTGTTTGggataatataatttaaaatgtttattagtaTTTCAGTCTTATTGCTTATTTCTCTCTAAATCTCAgctctgaaagaaaaaacaataaaacgaaaacaaatgttaaataaaaatcgATGTGCTAGTTCCTTGTAGACATTTTGTGTTGCTGTGTAATGATGTGTTCTCTGTATATTATTGCTaaaatagtttttttttcactagatTTTCCTGTTTATATGCATTCAATACTGTTCTATAATTGTTTAAACCAGTGTttgtaaaaatacattaaaaaggGTCTGTAAGGAGGTGATGGTTTAACAACAAAGTGGTTCAGTCCAGGCAGCCATACCTGctgtattgttattttagcggtcttttcctcctctctcccaAACGGAAGAGGTATGCTGTGTCCCATGCTACAGTTTAATAATTAGCATTGGTTGAAAATaattcacacacagaaatacatgTTTAAgttgttttatctgtttttgttgttatttacagATGTAAGATCATATATACTTAACGTACACGTTTCAGTGATGTGGATTGGTATACTTTGGAATGCTATTTTTGTTGACAGTGTTACTGATGTGTGAGCTGAAGCTGTCGTGACGATCTgtctatataaaaatacattctctATGCAGACCCAATCCTGTGCTCTCCTGTCGTTCTTCGCTAATTTTCCACACAATGCAGACCACAGAAGCATACGGTTACACATACAACAATTTTGTTGCTGTAAAGACATTGGGTCTTTGAGTTTCTTTTGCCTCTCCATACATATGCTGCATTTGATTTACCTTGGAAGTTGGAATCCGGAGCTttgaatgatgtcattttcaacctccatACATTCaggctacaaagtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326067 lncRNA downstream 39485 440793 ~ 448307 (-) True G275141
TU326058 lncRNA downstream 42364 444285 ~ 445428 (-) False LOC113531866
TU325947 lncRNA downstream 122768 362349 ~ 365024 (-) False LOC113531599
TU325941 lncRNA downstream 140343 347214 ~ 347449 (-) True G275049
TU325911 lncRNA downstream 195196 291650 ~ 292596 (-) True G275024
TU326075 lncRNA upstream 26062 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA upstream 26062 514984 ~ 518042 (-) False LOC113532194
TU326078 lncRNA upstream 26062 514984 ~ 518042 (-) False LOC113532194
TU326079 lncRNA upstream 26062 514984 ~ 518042 (-) False LOC113532194
TU326080 lncRNA upstream 26062 514984 ~ 518042 (-) False LOC113532194
XM_034313114.1 mRNA downstream 12577 422513 ~ 475215 (-) True LOC117599468
XM_034312958.1 mRNA downstream 93539 376457 ~ 394253 (-) True LOC117599422
XM_034312957.1 mRNA downstream 118755 354974 ~ 369037 (-) True LOC113531599
XM_034313069.1 mRNA downstream 200740 281434 ~ 287052 (-) True LOC113535352
XM_034313037.1 mRNA downstream 233947 248336 ~ 253845 (-) True LOC117599453
XM_034313120.1 mRNA upstream 27640 516562 ~ 525025 (-) False LOC113532194
XM_034313121.1 mRNA upstream 27640 516562 ~ 525025 (-) False LOC113532194
XM_034313118.1 mRNA upstream 27640 516562 ~ 525025 (-) False LOC113532194
XM_034313117.1 mRNA upstream 27640 516562 ~ 525025 (-) False LOC113532194
XM_034313119.1 mRNA upstream 27640 516562 ~ 525025 (-) False LOC113532194
TU325948 other downstream 118758 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 233975 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 341752 144583 ~ 146040 (-) True G274979
TU326084 other upstream 47524 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 94276 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 108492 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 120081 609003 ~ 611951 (-) False LOC117599466
XR_004579923.1 other upstream 140142 629064 ~ 631387 (-) True LOC117599510

Expression Profile