RNA id: TU326060


Basic Information

Item Value
RNA id TU326060
length 463
lncRNA type read_through
GC content 0.37
exon number 2
gene id G275134
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 382925 ~ 679665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgtttccttgactgacctgttccatgtctagTTGTTAGTAAACcactggtttctttctttttcaggacattccaaattattGTATTGGCTATTCCCAATGCTTGTGGAATgactctgattgattttccttcttttctcagcttccaaatggcttgcttttctcccatagacagctctctggtctttatgttggtttatcctttttaacaacaaatgcagtcttcacaggagaaacccagggctcaaaccaagagtagacattcagagctattaattctttaaacaatcaatctaacagggcaacaagaaacacctgtcagtcacatgttccaatatttttgatcacttgaaaaatgggtgggttcaaacaaaaggtgccatgttctaagttctTTAATACacctagatgtaaatatgaggaaatgaaagctgaaattctgatctgtcgtttcatattcatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325947 lncRNA downstream 17901 362349 ~ 365024 (-) False LOC113531599
TU325941 lncRNA downstream 35476 347214 ~ 347449 (-) True G275049
TU325911 lncRNA downstream 90329 291650 ~ 292596 (-) True G275024
TU325909 lncRNA downstream 95901 285815 ~ 287024 (-) False LOC113535352
TU325917 lncRNA downstream 97694 250671 ~ 285231 (-) True G275029
TU326100 lncRNA upstream 23666 703331 ~ 704000 (-) True G275167
TU326102 lncRNA upstream 23666 703331 ~ 704306 (-) False G275167
TU326103 lncRNA upstream 24105 703770 ~ 705100 (-) True G275168
TU326104 lncRNA upstream 28666 708331 ~ 718266 (-) True G275169
TU326105 lncRNA upstream 38780 718445 ~ 719883 (-) True G275170
XM_034312957.1 mRNA downstream 13888 354974 ~ 369037 (-) True LOC113531599
XM_034313069.1 mRNA downstream 95873 281434 ~ 287052 (-) True LOC113535352
XM_034313037.1 mRNA downstream 129080 248336 ~ 253845 (-) True LOC117599453
XM_034313090.1 mRNA downstream 223643 134189 ~ 159282 (-) False cmah
XM_026928103.2 mRNA downstream 224044 131691 ~ 158881 (-) False cmah
XM_034313113.1 mRNA upstream 6371 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA upstream 6371 686036 ~ 694483 (-) False LOC113543469
XM_034312963.1 mRNA upstream 225582 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 227565 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 495645 1175310 ~ 1177234 (-) True LOC117599470
TU325948 other downstream 13891 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 129108 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 236885 144583 ~ 146040 (-) True G274979
XR_004579897.1 other upstream 190325 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 452423 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 602789 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 614475 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 708531 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile