RNA id: TU326080


Basic Information

Item Value
RNA id TU326080
length 2880
lncRNA type read_through
GC content 0.42
exon number 3
gene id LOC113532194
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 514984 ~ 525025 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCAGTCCACTGGAAGGTACCCTTGACTGCCCCCAGTCCACTGGAAGGTACCCTTGACTGCCCCCAGTCCACTGGAAGGTACCCTTGGTCTGCCCCCAGTCCACTGGAAGGTACCCTTGACTGCCCCCAGTCCACTGGAAGGTACCCTTGACTGCCCCCAGTCCACTGGAAGGTACCCTTGGTCTGCCCCCAGTCCTCTTGAGTAGTCTGCTCCTAGTCATCTAGAGTGTACTCTGATCTGACTGCAGTCTGCTAGAATGTACCCTGGTCTGCTCCCTGTCCACTCGAGCGTACACTGATCTGCCCCCTGTCCACTAGAATCTACCCTGGTCTGCCCCCTATCCACTTGAGTGTCCACTGGTCTACCCCCCAGTTATCTGCAGTATACCCTGGTCTGCCTGCAATCCGATAAAATGTACCCTGGGCTAACTCTATTCGACTGCAGTGTATCCTGGTTTGCCCCAAGTCCAGTTGAGTGTACTCTGGTCTGCTTTGAGTCTACTTGAGTATACCCCTGTCTGCCCACTAGTCTAACCAGTTTGCCCAAAGTTTAATCAATCATAACTTGGTGTGCACACAATCTTCTTAAACAGACCCCACTTTGTACCCGAGTATACCCCTGTCTGCCCCAGTCCACTAAAATATTAACCTCGTCTGCCCCCAGTCTACTCCAGTTAACCCCCTGTCTGTGTGAGCATACCCTGTTCTGCCCCCCGTCCGTGTGAGTTGGTCTTACTGTTTCCTCTCTTCCCCTTTTTGTCTGCAGTATTCCCACCCTATTCCTCATCAGACTTCACTACACCCCCAGCTCTTCCTATCTGCCCCACTGAGATTCGATCTACCCCTAATCTTTGACCTTTTGCCTCTAGTGACCTTTTGATTGTTACCTGATCCTTCCTCAGAAACTGGAGTATTCTCACCAACAGAACACAGCATTGTACTGCCCGTGTCTAATCATACCCCCTGCTAATCAGCCCCAGCAAGTCAGTCTCTCCCAGTCTTAGTTTAAACCAGTGACCAATGTGCTAACGGTTCTCCAGCGTGTCAGGCTGAGTCCACCCCACTCGCCCCTGTCGGAGTTACTCGGGGTGCCTGAGGGGCGCGTGGTGCGATCTCACCGTCACCACACCCACTGTTTTTAGAGCTTTCTCTCCTTTTATAATACGTATACAACCGCTATATATGCAACAGCCACTCTTATTTTACCTTGCTTGTACATTTGTCcatgttttctgtttaattaatgatagaattattattattattattattatcattattattattactgttaattGTCCCGAGACAAAgccttgacttttttttttttttttttaaagattttaatcaTGACAGTGTTGAAAGAAGATTATGACTTATCGAAATCTCTAAAGctctggttgtgtgtgtgtgtgtgtgtgtgcgcagtcgGGTCCAAACGTCTGTGTTCACTcccaagaactgtttttatttcatcagttatcgAACACTAATAATCGTTGTctcagtccacacacacacagtcgtaTAAACCCGTAACGGTGTTAATTGTCGTCTCTTCATTCTCTTCTAACACTTTGATCTCGCCCCAGATCATGTTTTACCAGAATAGGTGTGTTGaagaaattataattttatacatttttgatAACTGATGAATGAAAactgttctttattttctgatttcatGCTGTTTATGATGCGCTAAAGCAGGTTTTATAGCAGTAATCAATGATCCTCGTTAAATACCGGCATGTTCATGCGCAGTTCTGCAGTATTAGCACTAAACGCTAAAGGCTGCATGTTTCAGGCTCGATCTGTACTTTAGCAGCTTacaattcattcatatttacaggtttttttttttaatttaccagAAGTTCAACCAGATATACCTTTGGCTTGCTAAGCTAATTTGCACTGAGCATTTGCACTTGGCATGTTAGCTAAGTTCACattttaatgtgtaaaatttGTACAATTTAGCagaaatatgtttttcattattacattttattcatcttgCTAGCTTAGCTACCTTGTCAGTTcgttactgtaaaatataattgtCCCAATTTGCAAGTTAGCCAAGGTAATATTTTGAAGagtgtaatattttttcttttttttttttttaatcagaaatacGACATCCCATCAGCTTAGCTAACAAGTAATACCTAGTAGCTACCTGAGTTTGCAAGTTCATCTTTTGCAATTTACAGTTTTCCTGATTAACCACAAGACGTCCATATCCCTTACACTTAGCAAATTTACAGGCTAGCTAGCACTGACCATTTCCCCGACCTGACATGTTAGCTAAGTTTTCAATTTGCAAGAATAccaattattataaataatttttagcAGTGTCCCATGGCGCGCTAGCCTGTAAGTTCTTAGCAGAAATTGGTCGTTGTCACTTGCTAACTTCCTGCAGTAATGTGGAGAGAAGGCTGAAGTATTGTTTGAGCTGATTGTAATGTTTACTGACGCACAGACTGCCCTCTGCTGATACGATGCCAAACGaaatgcatttttacatttttaataagaacaaaagtgtgtgtttactgttctCGAGTGTTTCATGTACTGATAGAAGATATTTACACAGATGCCATATTACAGTACAGAGCTCGTCTTCCTCCATCCTGTCACATGTTTTAATGACAAGTTTAAATACAAATCCAatgaaaatgaagtgaaattgtaTTTATTCTCCTTTATTCTTTTTAGTTCATGTCAACATTTTCAACTGAATCACATTAGGAAtctcatttttctccttttctcacACATTTCTAAGAATAAAACATCCCCACACTCCATTTTTCTACACCTCACGAACACCTTGATGTCTTAAAATAAAAGCGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326041 lncRNA downstream 26062 487792 ~ 488922 (-) True G275126
TU326067 lncRNA downstream 66677 440793 ~ 448307 (-) True G275141
TU326058 lncRNA downstream 69556 444285 ~ 445428 (-) False LOC113531866
TU325947 lncRNA downstream 149960 362349 ~ 365024 (-) False LOC113531599
TU325941 lncRNA downstream 167535 347214 ~ 347449 (-) True G275049
XR_004579905.1 lncRNA upstream 12057 530099 ~ 530740 (-) True LOC117599492
XR_004579934.1 lncRNA upstream 14784 532826 ~ 533618 (-) True LOC117599521
TU326100 lncRNA upstream 185289 703331 ~ 704000 (-) True G275167
TU326102 lncRNA upstream 185289 703331 ~ 704306 (-) False G275167
TU326103 lncRNA upstream 185728 703770 ~ 705100 (-) True G275168
XM_034313105.1 mRNA downstream 3223 403961 ~ 511761 (-) False LOC113531866
XM_034313103.1 mRNA downstream 3239 403961 ~ 511745 (-) False LOC113531866
XM_034313102.1 mRNA downstream 3259 403961 ~ 511725 (-) False LOC113531866
XM_034313099.1 mRNA downstream 3262 403961 ~ 511722 (-) True LOC113531866
XM_034313100.1 mRNA downstream 3265 444476 ~ 511719 (-) False LOC113531866
XM_034313106.1 mRNA upstream 42665 560707 ~ 629004 (-) True LOC117599466
XM_034313108.1 mRNA upstream 145683 663725 ~ 683075 (-) False LOC117595727
XM_034313110.1 mRNA upstream 145683 663725 ~ 683075 (-) False LOC117595727
XM_034313107.1 mRNA upstream 145683 663725 ~ 683075 (-) True LOC117595727
XM_034313113.1 mRNA upstream 167994 686036 ~ 694483 (-) True LOC113543469
TU325948 other downstream 145950 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 261167 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 368944 144583 ~ 146040 (-) True G274979
TU326084 other upstream 18404 536446 ~ 539298 (-) True G275152
XR_004579942.1 other upstream 65156 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 79372 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 90961 609003 ~ 611951 (-) False LOC117599466
XR_004579923.1 other upstream 111022 629064 ~ 631387 (-) True LOC117599510

Expression Profile