RNA id: TU326084


Basic Information

Item Value
RNA id TU326084
length 796
RNA type TUCP
GC content 0.50
exon number 5
gene id G275152
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 536446 ~ 539298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagaGCTGTAGTTCAGCAGGTTGGGGGAATAATAATTGTGATCATGGTGttgatgctggagtcacctgctcagaaactGAACCTGATGAAGCTGATCAgaagacagttatacagacagACAGTTTGAGGTTGATGgatggtggaagtcgctgtgctgggagagtggaggttcttcatgatggacagtggggaacagtgtgtagttctgcctgggatatgaaagatgctgcagtggtgtgtagagagctgcgctgtggggagcctgtagatCTGTGGTATTGGGCTGGGTTTGGAGAAGGATCAggagaaatctggatatatgaTTTGTACTGTAGAGGATCAGAATTGACGCTGAACAACTGTAGCTCACAAGGGGGACATATCTGTGATCATGTTagtgatgctggagtcatctgctcaggtgaaaatttgagactcactgctggtcctcaccggtgctctgggagagtggaggtgcttcatggaggttcctggtccacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtgggattcctgtggaggtgctgggatcagctgcttttggccgaggggagggtcaggtgtggacagaggagcttcagtgtagaggcaACGAATCTGAGATTTacttctgtccaacatcatcttcactcaaacactcagactgctcccattacaacgatgtgggattaatatgttctggtcacacagaggctcggctggtgaacggatcggactcctgttctggtcgagtggagctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579934.1 lncRNA downstream 2828 532826 ~ 533618 (-) True LOC117599521
XR_004579905.1 lncRNA downstream 5706 530099 ~ 530740 (-) True LOC117599492
TU326075 lncRNA downstream 18404 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA downstream 18404 514984 ~ 518042 (-) False LOC113532194
TU326078 lncRNA downstream 18404 514984 ~ 518042 (-) False LOC113532194
TU326100 lncRNA upstream 164033 703331 ~ 704000 (-) True G275167
TU326102 lncRNA upstream 164033 703331 ~ 704306 (-) False G275167
TU326103 lncRNA upstream 164472 703770 ~ 705100 (-) True G275168
TU326104 lncRNA upstream 169033 708331 ~ 718266 (-) True G275169
TU326105 lncRNA upstream 179147 718445 ~ 719883 (-) True G275170
XM_034313120.1 mRNA downstream 11421 516562 ~ 525025 (-) False LOC113532194
XM_034313121.1 mRNA downstream 11421 516562 ~ 525025 (-) False LOC113532194
XM_034313118.1 mRNA downstream 11421 516562 ~ 525025 (-) False LOC113532194
XM_034313117.1 mRNA downstream 11421 516562 ~ 525025 (-) False LOC113532194
XM_034313119.1 mRNA downstream 11421 516562 ~ 525025 (-) False LOC113532194
XM_034313106.1 mRNA upstream 21409 560707 ~ 629004 (-) True LOC117599466
XM_034313108.1 mRNA upstream 124427 663725 ~ 683075 (-) False LOC117595727
XM_034313110.1 mRNA upstream 124427 663725 ~ 683075 (-) False LOC117595727
XM_034313107.1 mRNA upstream 124427 663725 ~ 683075 (-) True LOC117595727
XM_034313113.1 mRNA upstream 146738 686036 ~ 694483 (-) True LOC113543469
TU325948 other downstream 167412 365089 ~ 369034 (-) False LOC113531599
TU325907 other downstream 282629 251625 ~ 253817 (-) False LOC117599453
TU325852 other downstream 390406 144583 ~ 146040 (-) True G274979
XR_004579942.1 other upstream 43900 583198 ~ 586818 (-) True LOC117599529
XR_004579946.1 other upstream 58116 597414 ~ 601029 (-) True LOC117599533
TU326089 other upstream 69705 609003 ~ 611951 (-) False LOC117599466
XR_004579923.1 other upstream 89766 629064 ~ 631387 (-) True LOC117599510
XR_004579897.1 other upstream 330692 869990 ~ 870475 (-) True LOC117599484

Expression Profile