RNA id: TU326103


Basic Information

Item Value
RNA id TU326103
length 583
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G275168
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 703770 ~ 705100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatgtttaaaagttaaTCACACTGTGTTCTGAATGCACATGAAAGGGTTCTGTGAGGATTGTAGAACCGTGCCAAAGGTTCTAGAACAGCACGGAGACGTCCTACGGTTTACAACGTGGTTCTAGAACTCAGAGTATTGAGGACCGGTTTTGATTTGATTGATGTGAGGATTCCAGAATCAATCGCTGAACCGCTGTGGGCTCTAGAACCACACTGAAACTCGAGAACCGGACGCTGCCGTCACTAGGCCTCACCCTTTCGACTGGCCGTTCGCTCGGTTCTCAAAGAACTTGATCTCCAGCACGTCGTTGATGCCGATGGAGCGAATGGCTTCGGTCAGATCCTCGTCTGTGGTCCACTGTGGAGAACAAACAGCCTCATTACTGCATTTCACCCCATCACTTCCTCattctcagccaatcacaaaccACCTAATTTACATACGCTTCAATATTCATGACCTGATAATGTTACACTGTATCACTACACACGCTCGCTACACACGGCACAACAGCAGCGCAAACCTGCGCCTGTCTCCTACccaggtgaggtgtgtgtgtctatcttacccaggtgaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326060 lncRNA downstream 24105 382925 ~ 679665 (-) True G275134
XR_004579934.1 lncRNA downstream 170152 532826 ~ 533618 (-) True LOC117599521
XR_004579905.1 lncRNA downstream 173030 530099 ~ 530740 (-) True LOC117599492
TU326075 lncRNA downstream 185728 514984 ~ 518042 (-) False LOC113532194
TU326076 lncRNA downstream 185728 514984 ~ 518042 (-) False LOC113532194
TU326104 lncRNA upstream 3231 708331 ~ 718266 (-) True G275169
TU326105 lncRNA upstream 13345 718445 ~ 719883 (-) True G275170
TU326113 lncRNA upstream 41350 746450 ~ 750995 (-) True G275178
TU326147 lncRNA upstream 51300 756400 ~ 782210 (-) True G275202
TU326148 lncRNA upstream 53842 758942 ~ 784853 (-) True G275203
XM_034313113.1 mRNA downstream 9287 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA downstream 9287 686036 ~ 694483 (-) False LOC113543469
XM_034313108.1 mRNA downstream 20695 663725 ~ 683075 (-) False LOC117595727
XM_034312963.1 mRNA upstream 200147 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 202130 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 470210 1175310 ~ 1177234 (-) True LOC117599470
XM_034312967.1 mRNA upstream 537038 1242138 ~ 1255186 (-) True LOC117599427
XM_034312968.1 mRNA upstream 558649 1263749 ~ 1297899 (-) True LOC117599428
XR_004579923.1 other downstream 72383 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 91819 609003 ~ 611951 (-) False LOC117599466
XR_004579946.1 other downstream 102741 597414 ~ 601029 (-) True LOC117599533
XR_004579942.1 other downstream 116952 583198 ~ 586818 (-) True LOC117599529
TU326084 other downstream 164472 536446 ~ 539298 (-) True G275152
XR_004579897.1 other upstream 164890 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 426988 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 577354 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 589040 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 683096 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile