RNA id: TU326104


Basic Information

Item Value
RNA id TU326104
length 3023
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G275169
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 708331 ~ 718266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttaaataacctgaatgtttaaagtttaacaaagtaaaaatcaTCAACTGGATAttaaaattactgtaaaatccaCTTACCTGTTAGAGCCAAAGAggtgagaatgagagaaaatcCTCATCCTGAGTCACATGACGATCTACATTCAGACCCTTTCACTCCTAATTCATTAGACGCAACAAGGACATTTCACCTCACTTCAAGGGAAACACACCTGAATACAAAGGAGAGTTCACCCAAAAATCCCATCTTCTCTACCTCAGGTTTCTTCAGTTTGAAtaaaaagtgcattattttcctaAACAGTGGCTTCTACAGCATCTGATTGTCCTTCACGCCACATCCGTATCCATTACAGCTCTAATATAGTGGAAGAATTCAGATCAATCTTCAGttaacatttacaacatttcaCACAATTAACCCACTGACACTTGAACTGTTTACTGGACTGGAGCTTCTCATGCTTTAGGAGTCGTGATTTACAACAAAGCAACATTTCTGGACCAAAAACTAAAAaccaaacacaataaaacaaatctttttGTGAAAAGTTTTCACTTAAGATACTTCTTCTTACAACTTTTTCCTTGTTTCTGAGCTttaatgtgaaagtgtgaaacATTTGTACACCAAATTTAAACTATTTctattaaacagaaaaaaatccatccaCACCCTGTACTTTCTACACTTtatcaaaaaaataatagtaataataagctaatagtttttatttttatttttacaaattccCATTACTCCTCACTGCATTAAAATCTGCACCAAATGAGAATACAGTAATGATCACGATTCCTCACTGCCTCACTTCCTAAGAACAATCAAAAAGTATTATAACTCAGTGAATATTAAAATCCCTGTAAAGTGCACATCTAAAGCTTTAAATCAGGACAATTTTGCGTCCAATtacattgaatttttttccatgcatgtaaacaaacagatttttaaaacctGATGGGACAAAACATATTAAATTCCATTAACAATTTGACCTCATCACTTaattatttagacattttccataattaaaaaaaaaacaaaaaaaagccttaCTAAAAATACCTGATGCTTGCAGTAAAGATCTATAAACATTCACAGTCAAAATTTTAccaaatcacaaaaacctgagTAACATTAAATCCATACAAATCATATCATCCTTGAAATGCACATCTAATGCTTTCACTAACTTACAAAACTCTTTTTACAGCTACAATtcaaacacacagagtgtgaaCGTTTGTAAAAACATTGATGTTCATCCCCTTATTAAAGCTTTCGGCATAAATTCTGCATATTACAAATAACCACCTCGACAAAATGCACATCTAAAACTTCAAATCTGGATTAACAGTCAGAAATGTAAACCTTTCACCTCACCATGAAGCTACAattgctaaataaattaaaagtataGTTTGCTCTAGAGTTGCTGCTGTAACAGagtcacacactaacacaagaaaagaaataaaaataaaggtaaaCTCTAAATTACTTGCTTCGTAGttttctgtttaaatgtaaattttctaGCAAAAGCTACAAATTTAACATCTGGAATGCTAGCTACTGATTTCAAAAAGGCCATTATCAAAAATTAGCCACAtggaaaaagtacaaaaatatacaattttacaaaaaaatcagacaCTATTCACGTAGTCATGAGGTAAGACatctaaaaaatttaatttcttttttccgTAAATGGTTCAGATCAAATTtaggcatgtgccgataatCCGTTACGCAATTATTATATTCGGaatgtagatttttatttacgATTATGAGCGAACTCACACGCTGCACTGACGAGTCGTCTGTGTACGCAAAGCTCAGAAAAAGAAGCTTAAAGATGTACAAATTTGGACGAAGAGGAAAAAATTTAGCACTCAAATAGTAATTTACcgttttaaatctaaatatttaaaaaataacaacagagATGAGTACGATCCATCAGCACATGCCTAAACAGAGATCACGTTTTCAGCTGTTCAGTGCAATGAGTAAACATGTACAACATGAAAAACGCTTCAAGAAATACAGAGTATAAACAAGTGGCAACCCCAGAAACACTTTATTACAACACAGTCTATTTAATAAATCAAGGCAGAGACATTCACAGACAATGATGCAGACAAACGGCGGGGAAAAATGAGGGGAAGAGGGCGATGAAAACAAAAGTTCCCTATAAAAACAACGTCTAACGATTTACACATTACAGGAGGCGTCAAAACGTTACGTTTTTGGTGGAGGACCGAGCAGGCAAAAGTTACTTTAACGCCGAAAAAGCtgaacttacttttcttcttcttcttccaatTACGCAgatcaaataaaatgtcaaaaaataaaaaaatacgcTGCTGGGAATTAAGAGTGAGcaagtatatataatatatatacgtTTGAAACAGATCTGTACTGGAGCGCTGCGTGGACGAGTCCAGTCGTCTTGGTGACGGAGGGATGAAGAGCGCTGATGGATGAGTGTGAAGTGCTCAGGTcgcttcttcttcctcctcctcctcctcgtttTCTTCCATTCAGctttgcgTCCTAACGATGGCGGTACTCCCTCTCTCGGTCGCGGTCTCTCTCACGGTCACGGTCCCTCTCGCGATGGCGGTCTTCGCGGCTTCGCTCGCGGTAGTAGTCCTCGTGGCGGTCGCGGCTGCGAGATTTGTGACGGCGACTCTTCTCGCGGGAGCGGCTGTGGTCCCGATCCCGCGATCGCTCTCGTCTGGAGGCGGAGCCGTAGGATTTGGACTCGATGCCGTGCAGGCAGTCCTGCAGAGAGCTGATCAACACTTTACAGCGATCGTCAGCCGAAACCTTCGACTGCTTTATTAATGAGATTGCAGTCACCAGTGTCTCGATAGCACTGCCGTAATCTCCTGAAAAACACGcgcgagacagagagacacacgaTCAGGTTAATGAGTGCGGAGCCACCTGCTCCGTCTGCACTCCAGCCAGCACTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326103 lncRNA downstream 3231 703770 ~ 705100 (-) True G275168
TU326102 lncRNA downstream 4025 703331 ~ 704306 (-) False G275167
TU326100 lncRNA downstream 4331 703331 ~ 704000 (-) True G275167
TU326060 lncRNA downstream 28666 382925 ~ 679665 (-) True G275134
XR_004579934.1 lncRNA downstream 174713 532826 ~ 533618 (-) True LOC117599521
TU326105 lncRNA upstream 179 718445 ~ 719883 (-) True G275170
TU326113 lncRNA upstream 28184 746450 ~ 750995 (-) True G275178
TU326147 lncRNA upstream 38134 756400 ~ 782210 (-) True G275202
TU326148 lncRNA upstream 40676 758942 ~ 784853 (-) True G275203
XR_004579906.1 lncRNA upstream 122362 840628 ~ 841268 (-) True LOC117599493
XM_034313113.1 mRNA downstream 13848 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA downstream 13848 686036 ~ 694483 (-) False LOC113543469
XM_034313108.1 mRNA downstream 25256 663725 ~ 683075 (-) False LOC117595727
XM_034312963.1 mRNA upstream 186981 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 188964 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 457044 1175310 ~ 1177234 (-) True LOC117599470
XM_034312967.1 mRNA upstream 523872 1242138 ~ 1255186 (-) True LOC117599427
XM_034312968.1 mRNA upstream 545483 1263749 ~ 1297899 (-) True LOC117599428
XR_004579923.1 other downstream 76944 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 96380 609003 ~ 611951 (-) False LOC117599466
XR_004579946.1 other downstream 107302 597414 ~ 601029 (-) True LOC117599533
XR_004579942.1 other downstream 121513 583198 ~ 586818 (-) True LOC117599529
TU326084 other downstream 169033 536446 ~ 539298 (-) True G275152
XR_004579897.1 other upstream 151724 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 413822 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 564188 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 575874 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 669930 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile