RNA id: TU326105


Basic Information

Item Value
RNA id TU326105
length 1439
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G275170
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 718445 ~ 719883 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATCACTGAAAACAACAGATAAGAAAAATCATTCTTTAAAAACTCTTTAGCATTGTGCTAACTCAATTATTTACATGTGTGCTGATGTTTCTGTGGTATCTGTGTTTAGGCCTCAGGTTTCCTCTCTGGACCAGCTTCATTTTCTTCGCGTCCCTGGTGACCCGTATTGTATCGAGCGGCCGGTGAAGACTCCGCGGTGGTTATTAAAGGCCTCACTCACAGTAATGCAGACTGTTGGTCCATCCGTGTCCTCTAAATGTGGCTCTATAGCCTCAAAGCAGAACCATCAGAACCTCTCCATGACCACTGGGGACTTCTTCACTTTCCCAGTAGTGACTGTACGATAGGTTTACGCTAATCCGACATTATAGCATCCGAGAGATTAGCGTAAGCTTAGCCTGGCAAAATATAGGAGGTTTGATGTATGGACATTATTGTGCACTAACCTTTAATCACTGTAACTAAAggttaagtgtgtgtaaaatacataACTGTGTATTTATgagttttaaaacaattatataCTAATATAAATTTCAGGAAAGTTTAGGGGCTAAACAAATATGGCTTtgcttttgtctttgttttatatttaaattagtaCACTTGGCAATTTacatataatttgtaaataatttacagacAAACATCATGCACTTTACATGAAGAATGCATTGCTACATTTCATCAtcacaaattaaatttattattaaaggttatatgtaatttatagcttttttttttcctcgaaaTAATTCTGGTTCCAGTTGTCATCAACAGCCAAAGAACATTCAGGTTTATTAAACACGTTTATGCGCTAGCTGTGCGGAAAATTAACTGACGAGCAGTGAAACGTTAAACACTACAGTTAACCATGCTGCCCTCTGGTGGCCGGATATAAACACGTCGTTGTCCTGCTGCTCCTGAATCATGCAGGTTTTAATGAGATCTGGATATTTCTGTAACACTACGGTCTCTGAAAACCCAAACAGGGATGAAAAGGCAATAACACTACAACGATTAATTTAACAAGCCACGTTACACAATCCCAACTTATTAATTTATACGCTGCGAGTTAACAATGCTGCCCTTTCTCAATAATTAATACGTACTAAAAGGTACTGCAGTAATACTGAAGTTCATTACGTATAAAATATTCATGAAGTGTTGGAAGTAACACGACTCCCTTTAAAACTGAGCGGCTTTGTAAATAGataaaattacattattgaTTGTGTAACTTTTATATTTCATCATAAGCGGTATGTATAAAGCACGTAGTCATGCACTTCCTGCCATTTATGGGCTAAATGTAGAtgcatttgttattttattttatttatttatttattttaaacagtgaGCAATGTGTATTTACCCCAAACACCaattttattcagaataaaaaacagTCCTTAGAAACAACTGCAAGTTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326104 lncRNA downstream 179 708331 ~ 718266 (-) True G275169
TU326103 lncRNA downstream 13345 703770 ~ 705100 (-) True G275168
TU326102 lncRNA downstream 14139 703331 ~ 704306 (-) False G275167
TU326100 lncRNA downstream 14445 703331 ~ 704000 (-) True G275167
XR_004579934.1 lncRNA downstream 184827 532826 ~ 533618 (-) True LOC117599521
TU326113 lncRNA upstream 26567 746450 ~ 750995 (-) True G275178
TU326147 lncRNA upstream 36517 756400 ~ 782210 (-) True G275202
TU326148 lncRNA upstream 39059 758942 ~ 784853 (-) True G275203
XR_004579906.1 lncRNA upstream 120745 840628 ~ 841268 (-) True LOC117599493
XR_004579925.1 lncRNA upstream 126050 845933 ~ 846981 (-) True LOC117599512
XM_034313113.1 mRNA downstream 23962 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA downstream 23962 686036 ~ 694483 (-) False LOC113543469
XM_034313108.1 mRNA downstream 35370 663725 ~ 683075 (-) False LOC117595727
XM_034312963.1 mRNA upstream 185364 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 187347 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 455427 1175310 ~ 1177234 (-) True LOC117599470
XM_034312967.1 mRNA upstream 522255 1242138 ~ 1255186 (-) True LOC117599427
XM_034312968.1 mRNA upstream 543866 1263749 ~ 1297899 (-) True LOC117599428
XR_004579923.1 other downstream 87058 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 106494 609003 ~ 611951 (-) False LOC117599466
XR_004579946.1 other downstream 117416 597414 ~ 601029 (-) True LOC117599533
XR_004579942.1 other downstream 131627 583198 ~ 586818 (-) True LOC117599529
TU326084 other downstream 179147 536446 ~ 539298 (-) True G275152
XR_004579897.1 other upstream 150107 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 412205 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 562571 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 574257 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 668313 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile