RNA id: TU326113


Basic Information

Item Value
RNA id TU326113
length 724
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G275178
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 746450 ~ 750995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTTGCTCTGCAGCATGGTGTGGATCCTCTGCTGGGAGCTCTGGCCCTGCTTGGTGCGGATCAGCAGGTACAGAGCTTTAACCTCGGGACAGGAACGCAGCAGCTTCTCCACCAACACCTTCCCCATGAAGCCCGTCGCCCCGGTGATCAGCACACACTTCCCTGCGTAGAACTCCGACACACACGCCATGACcgcagcacacacacccagctcccACTAACGGCTGCGTTAACGGCTGCGTCAGGCGCTGACTCCTGcgttacacagacacacacgcgaGGAGAAGAAAATCCTCCGAGCGATGACTCAGTGGCTAAACATCTGAGCTCGTAATCAGAAGGGGGTGCGTTTAAATTCCAGCGTGTTCAGACGTGAAGAAAAGGATTTCACTGTACTGCACACGTGACAAGGAACGTTTccttaaaacaataaaataaataaatataaataaaacaacaacacaataaaaaacatttacagcagAATTAAAGATAAAGTTCTCTAACTGACGGTCTCACTACGCTGCGTTACGTTAACGTTTACAACCTTCAACTGAGAACCTCCAGAGAGACCAAAAGAACAGGAATGACGAGAGAGAGGATTAGCCTGCTTCAgcgggaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326105 lncRNA downstream 26567 718445 ~ 719883 (-) True G275170
TU326104 lncRNA downstream 28184 708331 ~ 718266 (-) True G275169
TU326103 lncRNA downstream 41350 703770 ~ 705100 (-) True G275168
TU326102 lncRNA downstream 42144 703331 ~ 704306 (-) False G275167
TU326100 lncRNA downstream 42450 703331 ~ 704000 (-) True G275167
TU326147 lncRNA upstream 5405 756400 ~ 782210 (-) True G275202
TU326148 lncRNA upstream 7947 758942 ~ 784853 (-) True G275203
XR_004579906.1 lncRNA upstream 89633 840628 ~ 841268 (-) True LOC117599493
XR_004579925.1 lncRNA upstream 94938 845933 ~ 846981 (-) True LOC117599512
XR_004579904.1 lncRNA upstream 126043 877038 ~ 878254 (-) True LOC117599491
XM_034313113.1 mRNA downstream 51967 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA downstream 51967 686036 ~ 694483 (-) False LOC113543469
XM_034313108.1 mRNA downstream 63375 663725 ~ 683075 (-) False LOC117595727
XM_034312963.1 mRNA upstream 154252 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 156235 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 424315 1175310 ~ 1177234 (-) True LOC117599470
XM_034312967.1 mRNA upstream 491143 1242138 ~ 1255186 (-) True LOC117599427
XM_034312968.1 mRNA upstream 512754 1263749 ~ 1297899 (-) True LOC117599428
XR_004579923.1 other downstream 115063 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 134499 609003 ~ 611951 (-) False LOC117599466
XR_004579946.1 other downstream 145421 597414 ~ 601029 (-) True LOC117599533
XR_004579942.1 other downstream 159632 583198 ~ 586818 (-) True LOC117599529
TU326084 other downstream 207152 536446 ~ 539298 (-) True G275152
XR_004579897.1 other upstream 118995 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 381093 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 531459 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 543145 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 637201 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile