RNA id: TU326147


Basic Information

Item Value
RNA id TU326147
length 210
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G275202
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 756400 ~ 782210 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGaaagtgcacatgcacatgcacacacacacacacatttgcacctgcactaaatcagaagctttaatagatgcttatcagcagaattctgtctctacaccacatgtactctaactgcacatttcctctcacacacatttagcttatttttatttatttgtcataatatatatacatatacaaatattatattatacattatacaccgatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326113 lncRNA downstream 5405 746450 ~ 750995 (-) True G275178
TU326105 lncRNA downstream 36517 718445 ~ 719883 (-) True G275170
TU326104 lncRNA downstream 38134 708331 ~ 718266 (-) True G275169
TU326103 lncRNA downstream 51300 703770 ~ 705100 (-) True G275168
TU326102 lncRNA downstream 52094 703331 ~ 704306 (-) False G275167
XR_004579906.1 lncRNA upstream 58418 840628 ~ 841268 (-) True LOC117599493
XR_004579925.1 lncRNA upstream 63723 845933 ~ 846981 (-) True LOC117599512
XR_004579904.1 lncRNA upstream 94828 877038 ~ 878254 (-) True LOC117599491
XR_004579889.1 lncRNA upstream 118563 900773 ~ 901840 (-) True LOC117599477
XR_004579890.1 lncRNA upstream 118566 900776 ~ 901840 (-) False LOC117599477
XM_034313113.1 mRNA downstream 61917 686036 ~ 694483 (-) True LOC113543469
XM_034313112.1 mRNA downstream 61917 686036 ~ 694483 (-) False LOC113543469
XM_034313108.1 mRNA downstream 73325 663725 ~ 683075 (-) False LOC117595727
XM_034312963.1 mRNA upstream 123037 905247 ~ 906730 (-) True LOC117599425
XM_034312964.1 mRNA upstream 125020 907230 ~ 907847 (-) True LOC117599426
XM_034313122.1 mRNA upstream 393100 1175310 ~ 1177234 (-) True LOC117599470
XM_034312967.1 mRNA upstream 459928 1242138 ~ 1255186 (-) True LOC117599427
XM_034312968.1 mRNA upstream 481539 1263749 ~ 1297899 (-) True LOC117599428
XR_004579923.1 other downstream 125013 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 144449 609003 ~ 611951 (-) False LOC117599466
XR_004579946.1 other downstream 155371 597414 ~ 601029 (-) True LOC117599533
XR_004579942.1 other downstream 169582 583198 ~ 586818 (-) True LOC117599529
TU326084 other downstream 217102 536446 ~ 539298 (-) True G275152
XR_004579897.1 other upstream 87780 869990 ~ 870475 (-) True LOC117599484
XR_004579907.1 other upstream 349878 1132088 ~ 1132569 (-) True LOC117599494
XR_004579908.1 other upstream 500244 1282454 ~ 1282934 (-) True LOC117599495
TU326402 other upstream 511930 1294140 ~ 1295377 (-) False LOC117599428
XR_004579909.1 other upstream 605986 1388196 ~ 1388678 (-) True LOC117599496

Expression Profile