RNA id: TU326402


Basic Information

Item Value
RNA id TU326402
length 474
RNA type TUCP
GC content 0.48
exon number 3
gene id LOC117599428
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1263749 ~ 1297899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagagtttaaagagatccGACTCACGGAGGGCTGTAAAGGGAATCTGGAAGTGTTCTACAATGGAACCTggggtaatgtgtgtcacaATCAGATGGAGCTGGAGGTAGAAACAGCAAATATGGTGTGTCAagagctgaactgtggaagACGCAAGAGTTTGACCTCAGCCAGAGGGAGAGTCGAATCTGCTCCTAATTGGCTGGATCATGTGAAATGTAGGAAACACGACTCTAATCTGTTAAAGTGTCCATCTTCACCCTGGGGACAGAACAACTGTGATAGTCGTAGTGATGAGGTGGTTCATATTACCTGCACAGAAGATGGAACGTCTCTACGTACTCATGGGACCTGCTCTAAATTTCCTCTTCAGAAATATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctgctctgggaggttggaggtgtatcataacgctacgtggggctccgtttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579911.1 lncRNA downstream 164 1292165 ~ 1293976 (-) True LOC117599498
XR_004579887.1 lncRNA downstream 31430 1261642 ~ 1262710 (-) True LOC117599476
XR_004579888.1 lncRNA downstream 31430 1261646 ~ 1262710 (-) False LOC117599476
XR_004579945.1 lncRNA downstream 52236 1241367 ~ 1241904 (-) True LOC117599532
TU326392 lncRNA downstream 145376 1145605 ~ 1148764 (-) True G275393
TU326407 lncRNA upstream 91175 1386552 ~ 1410588 (-) True G275408
TU326366 lncRNA upstream 101062 1396439 ~ 1462056 (-) True G275369
TU326409 lncRNA upstream 114314 1409691 ~ 1433883 (-) False G275408
TU326415 lncRNA upstream 118015 1413392 ~ 1454206 (-) True G275412
TU326417 lncRNA upstream 120993 1416370 ~ 1441145 (-) False LOC117599432
XM_034312967.1 mRNA downstream 38954 1242138 ~ 1255186 (-) True LOC117599427
XM_034313122.1 mRNA downstream 116906 1175310 ~ 1177234 (-) True LOC117599470
XM_034312964.1 mRNA downstream 386293 907230 ~ 907847 (-) True LOC117599426
XM_034312963.1 mRNA downstream 387410 905247 ~ 906730 (-) True LOC117599425
XM_034313112.1 mRNA downstream 599657 686036 ~ 694483 (-) False LOC113543469
XM_034312970.1 mRNA upstream 70734 1366111 ~ 1376319 (-) True LOC117599430
XM_034312971.1 mRNA upstream 96523 1391900 ~ 1395944 (-) True LOC117599431
XM_034312972.1 mRNA upstream 120528 1415905 ~ 1425651 (-) True LOC117599432
XM_034312975.1 mRNA upstream 1076247 2371624 ~ 2373304 (-) True LOC117599435
XM_034312976.1 mRNA upstream 1117165 2412542 ~ 2415193 (-) True LOC117599436
XR_004579908.1 other downstream 11206 1282454 ~ 1282934 (-) True LOC117599495
XR_004579907.1 other downstream 161571 1132088 ~ 1132569 (-) True LOC117599494
XR_004579897.1 other downstream 423665 869990 ~ 870475 (-) True LOC117599484
XR_004579923.1 other downstream 662753 629064 ~ 631387 (-) True LOC117599510
TU326089 other downstream 682189 609003 ~ 611951 (-) False LOC117599466
XR_004579909.1 other upstream 92819 1388196 ~ 1388678 (-) True LOC117599496
XR_004579902.1 other upstream 115754 1411131 ~ 1411615 (-) True LOC117599489
TU326424 other upstream 170482 1465859 ~ 1577516 (-) True G275420
XR_004580038.1 other upstream 200685 1496062 ~ 1496168 (-) True LOC117599633
XR_004579898.1 other upstream 293936 1589313 ~ 1589798 (-) True LOC117599485

Expression Profile